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Isoprime 100 isotope ratio mass spectrometer

Manufactured by Elementar
Sourced in Germany

The Isoprime 100 is an isotope ratio mass spectrometer designed to measure the abundance of stable isotopes in a sample. It is capable of high-precision analysis of isotopic ratios in a variety of sample types, including gases, liquids, and solids. The Isoprime 100 utilizes advanced ion source and detector technology to provide accurate and reliable results.

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9 protocols using isoprime 100 isotope ratio mass spectrometer

1

Carbon-Nitrogen Isotope Analysis of Transgenic Plants

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The ratio of carbon to nitrogen as well as δ 13C were analyzed based on leaf dry weight (mg) of 30-day-old and 50-day-old transgenic plants using the ISOTOPE cube elemental analyzer connected to an Isoprime 100 isotope ratio mass spectrometer (Elementar, Germany). The δ 13C ratio is expressed as parts per thousand (‰) using the international standard of the Vienna Pee Dee Belemnite (VPDB).
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2

Stable Isotope Analysis of Carbonates

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Subsamples for δ18O and δ13C analyses were milled at intervals of 0.1 and 0.15 mm for F11 and F2, respectively, by using a NEWWAVE Micromill device. All the subsamples were analyzed on an Elementar Isoprime100 isotope ratio mass spectrometer equipped with a MultiPrep system at the Institute of Earth Environment, Chinese Academy of Sciences, Xi’an. Standard NBS19 and TB1 were analyzed every 10 to 15 subsamples to check data reproducibility. The precision of measurements is better than 0.1‰ for both δ18O and δ13C with 2σ analytical errors. We scanned the Sr and Ca counts on the polished section of F11 at 0.1 mm interval, using a 4th-generation Avaatech X-ray fluorescence (XRF) core scanner equipped with the latest variable optical XRF technology following the method described in Li et al. (67 ). The analyses were carried out at the Institute of Earth Environment, Chinese Academy of Sciences. The average resolutions of the δ18O, δ13C, and Sr/Ca records of F11 are ~3.6-y and are ~4.4-y for the δ18O, δ13C records of F2 (Fig. 2 and SI Appendix, Fig. S5).
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3

Isotope Analysis of Marine Organisms

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Samples collected in 2019 (n = 10) were composited while those collected in 2020 were analyzed independently (n = 25) (Figure 2; Table S2). All animal and plant samples were rinsed with deionized water prior to processing. Ilyanassa obsoleta tissues were separated from the shell and tissues of the left cheliped of C. sapidus were isolated. Fundulus spp. were fileted to remove bones and scales. To remove inorganic carbon, aliquots of Fundulus spp., C. sapidus, Uca spp. and soil samples were fumigated prior to analysis [48 ].
Samples were analyzed using an Elementar Pyrocube interfaced with an Elementar Isoprime100 Isotope Ratio Mass Spectrometer (at ANS) or with an Elementar Vision and Elementar Vario Isotope Select (at the EPA). Isotope values were calculated based on reference standards and in-house working standards which have a precision at or better than ±0.40‰ (N) and ±0.14‰ (C) based on long term replication.
Shells of museum and modern specimens were powdered with a handheld Dremel tool with a diamond bit. Values of δ15N from shell-bound carbonate were measured at ANS with the instrumentation detailed above, however for this analysis, the Pyrocube moisture trap was retrofitted to include a section of NaOH to remove evolved CO2 followed by sicapent® for the removal of evolved H2O, allowing N2 to enter the isotope ratio mass spectrometer [32 (link)].
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4

Estimating Leaf Minimum Conductance and Carbon Isotopic Composition

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According to the method of Sack and Scoffoni39 , recent fully expanded leaves from each provenance were sampled at pre-drought, and then, minimum leaf conductance (gmin; the rate of water loss through the leaf when stomata are closed) was estimated. Leaf area was measured using a Licor-3100A (Li-Cor Inc., Lincoln, NE, USA). Samples were then dried in a growth chamber, with the air temperature of 25 °C, and a light intensity of < 5 μmol m−2 s−1. Afterwards, samples were weighed every 20 min at 6 to 15 intervals using a high precision balance. The gmin (mmol m−2 s−1) was calculated from the slope of the linear part of leaf mass vs. time regression in conjunction with chamber VPD and leaf area40 (link).
Other leaf samples were placed in the oven at 110 ℃ for 1 h and then oven-dried at 70 ℃ for at least 72 h. Leaf carbon isotopic composition (δ13C, ‰) was measured on these dried samples, using a PE2400 elemental analyzer (PerkinElmer, USA) connected to an IsoPrime100 isotope ratio mass spectrometer (Elementar, Germany).
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5

Stable Carbon Isotope Analysis

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All tin capsules were combusted in an Elementar Pyrocube and the resulting CO2 gas was analyzed with an Elementar Isoprime100 isotope ratio mass spectrometer at The Academy of Natural Sciences at Drexel University. δ13C values are reported relative to Vienna Peedee Belemnite Limestone Standard (vPDB) (δ13C = per mil deviation of the ratio of stable carbon 13C:12C relative to vPDB). Samples were analyzed in duplicate. Standards, B2150 (EA Consumables, LLC, Marlton, NJ), internal elk tissue, DORM (fish muscle) and bird feather standards had a precision of ± 0.14‰ for δ13C.
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6

Leaf Isotope Analysis Protocol

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Leaf material was oven-dried at 60°C for 48 h and used to determine δ13C and the C/N ratio. The material was analyzed using the Isoprime 100 isotope ratio mass spectrometer coupled to an isotope cube elemental analyzer (Elementar, Hanau, Germany), as described by Gowik and Bra (2011) (link).
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7

Quantifying Plant Growth and Physiology

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Plant height (H, cm) and basal diameter (D, mm) were measured regularly over the experimental period. Basal diameter was measured at 5 cm above the soil. The plants used for hydraulic measurements were harvested and we separated the leaves, stems and roots, which were washed free of soil. All harvested fresh organs were placed into an oven at 110°C for 1 h to eliminate biological activity and then oven-dried at 70°C for 72 h for dry mass determination. Leaf area (cm2) was determined using a portable leaf area meter (LI-3100A, Li-Cor, Lincoln, NE, United States). Specific leaf area (SLA, cm2 g−1) was calculated as the ratio of leaf area to leaf dry mass. Leaf carbon isotopic composition (δ13C, ‰) was measured on dried samples, using a PE2400 elemental analyzer (PerkinElmer, United States) connected to an IsoPrime100 isotope ratio mass spectrometer (Elementar, Germany). Leaf δ13C was used to estimate the integrated, long-term leaf water-use efficiency. One stem segment per harvested seedling was used to determine stem wood density (g cm−3). The volume of the fresh segment (without bark) was determined gravimetrically by the water displacement method. The dry mass was measured after 72 h by oven-drying at 70°C. Wood density was calculated as the stem dry mass divided by the stem volume.
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8

Soil Organic Matter Decomposition

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Initial subsamples of ground horizons L, F and H were weighed (5.0, 6.0 and 7.0 mg ± 0.2 respectively) and analyzed to estimate C and N contents by dry combustion in a CN analyzer (Vario Micro Cube; Elementar, New-Jersey, United States, dx.doi.org/10.17504/protocols.io.udces2w). The concentrations of soluble cell contents (e.g. nonstructural carbohydrates), hemicellulose, cellulose and lignin (% dry weight) were also determined on these initial samples by sequential digestion (Fiber Analyzer 200; ANKOM technology, dx.doi.org/10.17504/protocols.io.yinfude). After one and two years, organic matter samples were retrieved from litterbags, oven-dried at 60 °C for at least 72 h and then weighed to estimate mass loss percentage. These samples were then ground with a cyclone mill (Cyclone Sample Mills, UDY Corporation, Colorado, United States), using a 2-mm screen. Concentrations of C and N were also determined using the method described above. Thirty subsamples of the initial horizons, and all the F horizons after two years of residence were analyzed for δ 15 N with a Micromass model Isoprime 100 isotope ratio mass spectrometer coupled to an Elementar Vario MicroCube elemental analyser in continuous flow mode.
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9

Leaf Sample Preparation and Isotope Analysis

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After completion of the A-C i curve, the selected leaf part was harvested and dried at 70 C for ca. 48 h. The material was then homogenized to a fine powder in a Mixer Mill MM301 (Retsch GmbH, Germany) for 1 min and analyzed using an Isoprime 100 isotope ratio mass spectrometer coupled to an ISOTOPE cube elemental analyzer (both from Elementar, Hanau, Germany) according to Gowik et al. (2011) .
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