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Odyssey clx fluorescence scanning system

Manufactured by LI COR
Sourced in United States

The Odyssey® CLX fluorescence scanning system is a lab equipment product designed for the detection and analysis of fluorescent signals. It provides high-performance imaging capabilities for a variety of applications.

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3 protocols using odyssey clx fluorescence scanning system

1

Correlating EGFR Expression and Fluorescence

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To determine the correlation between fluorescence intensity and EGFR expression, three ROIs were randomly drawn based on each IHC stained EGFR slide. The mean fluorescence intensity of the ROIs was measured in a consecutive tissue slide from Odyssey® CLX fluorescence scanning system (LI-COR Biosciences, Lincoln, Nebraska, USA) and the system’s integrated instrument software (ImageStudio, LI-COR Biosciences, Lincoln, Nebraska, USA). Staining intensities for EGFR in each of the corresponding ROIs were calculated through analysis of whole slide scanned images (Hamamatsu NanoZoomer 2.0-RS, Hamamatsu, Japan). Image analysis was done in ImageJ. Images thresholds and the percentage of EGFR positive stained area related to the total ROI area were calculated (EGFR-stained area/total ROI area), and a regression line was generated.
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2

Protein Expression Analysis of Colon and BMSC

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Total colon tissues and BMSCs cells were extracted by RIPA lysis buffer with 0.1% PMSF (Beyotime, China). Protein quantification was performed with the BCA assay kit (Beyotime). The homogenized protein samples were fractionated by 4%–20% pre‐cast gel (GenScript) at 120 V for 1.5 h, and transferred onto nitrocellulose filter (NC) membranes (Bio‐Rad Laboratories,USA) at 110–120 V for 1 h. The membranes were blocked in blocking buffer (Beyotime, China) for 15–30 min at room temperature, followed by an overnight incubation at 4°C with primary antibodies (Anti‐Occludin, #91131, 1:1000; Anti‐E‐cadherin, #14472, 1:1000; Anti‐LC3B, ab192890, 1:1000; Anti‐Caspase‐3, ab32351, 1:1000), and respective fluorescent secondary antibodies (Goat anti‐Mouse IgG H&L IRDye 680RD, ab216776, 1:5000; Goat anti‐Rabbit IgG H&L IRDye 800CW, ab216773, 1:5000) at 37°C for 1–2 h. Finally, the immunoreactive bands were visualized using Odyssey Clx fluorescence scanning system (LI‐COR Biosciences, USA). Equal protein loading was normalized with Anti‐β‐actin antibody.
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3

Protein Extraction and Western Blot Analysis

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Total proteins from brain tissues and PC-12 cells were extracted by RIPA lysis buffer with 0.1% PMSF (P0013C, Beyotime, China). BCA protein assay kit (P0012, Beyotime, China) detected total protein concentration. The homogenized protein samples were fractionated by 4-20% precast gel (M42015C/M42010C GenScript, China) at 120 V for 1.5 h and transferred onto nitrocellulose filter (NC) membranes (Bio-Rad Laboratories, Hercules, USA) at 110–120 V for 1 h. The membranes were blocked in blocking buffer (Beyotime, Shanghai, China) for 15-30 min at room temperature, followed by an overnight incubation at 4°C with primary antibodies (Anti-LC3B, ab192890, 1 : 1000; Anti-SQSTM1/P62, #5114, 1 : 1000; Anti-Atg4B, ab154843, 1 : 1000; Anti-Bcl-2, ab59348, 1 : 1000; Anti-Beclin 1, ab207612, 1 : 1000; Anti-AMPKα(D5A2), #5831, 1 : 1000; Anti-p-AMPKα(Thr172)(40H9), #2535, 1 : 1000; Anti-ZO-1, ab96587, 1 : 500; Anti-β-actin, #3700, 1 : 1000) and respective fluorescent secondary antibodies (Goat anti-Mouse IgG H&L IRDye® 680RD, ab216776, 1 : 5000; Goat anti-Rabbit IgG H&L IRDye® 800CW, ab216773, 1 : 5000) at 37°C for 1-2 h. Finally, the immunoreactive bands were visualized using Odyssey CLx fluorescence scanning system (LI-COR Biosciences, USA). Equal protein loading was normalized with Anti-β-actin antibody.
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