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3 protocols using peroxidase affinipure goat anti rabbit igg h l antibody

1

Protein Extraction and Western Blotting Protocol

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To extract protein, ahRPE were washed and then lysed with RIPA buffer containing phosphatase and protease inhibitor cocktails (Roche) on ice. Samples were scraped on ice, agitated for 30 min at 4 °C and then centrifuged at 12,000 rpm for 20 min at 4 °C to remove debris. The supernatant was collected, aliquoted to prevent freeze-thaw cycles, and protein concentration was subsequently determined using Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific). Protein extracts were separated by BoltTM 4–12% Bis-Tris Plus Gels (Thermo Fisher Scientific) and transferred onto iBlot® 2 PVDF Mini Stacks (Thermo Fisher Scientific) membranes and were probed with antibodies (Supplementary Table 4). Proteins of interest were detected with Peroxidase AffiniPure Goat Anti-Mouse IgG, F(ab’)2 Fragment Specific antibody (1:10000, Jackson ImmunoResearch, Cat #:115–035–072) and Peroxidase AffiniPure Goat Anti-Rabbit IgG (H + L) antibody (1:10000, Jackson ImmunoResearch, Cat #:111–035–045), and subsequently visualized with ECLTM Prime Western Blotting Detection Reagent (GE Healthcare) according to the provided protocol. All samples were stored at −80 °C. Uncropped western blots for Figs. 3d, 5c, d, and 6d can be found in Supplementary Figs 5 and 6.
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2

Western Blot Analysis of VLP Proteins

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Proteins in VLP containing samples were separated by SDS-PAGE using 4–12% Bis–Tris Nu-PAGE gels (Invitrogen) and electro-transferred to a PVDF membrane using the Trans-Blot Turbo Transfer Pack (BioRad). Membranes were blocked (1xPBS pH 7.4, 0.05% Tween20, 5% non-fat skim milk) and subsequently incubated with a rabbit anti-HIV-1 p55 + p24 + p17 antibody (Abcam, 1:2000) overnight at 4 °C. After washing, the membranes were incubated with Peroxidase AffiniPure Goat Anti-Rabbit IgG (H+L) antibody (Jackson ImmunoResearch, 1:10,000) for 1 h at room temperature (RT), washed and developed using the SuperSignal West Pico PLUS Chemiluminescence Substrate (Thermo Scientific), and images were obtained using a ChemidocTMMP Imaging System (BioRad).
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3

Antibody-Based Protein Interaction Analysis

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Following antibodies were used in this study: anti-p-Smad (CST, 13820S), anti-Smad (ProteinTech, 10429-1-AP), anti-p-STAT3 (ser727; CST, 9134S), anti-STAT3 (CST, 9139S), anti-SOCS3 (CST, 2923S), anti-myc (CST, 2276S), anti-β-actin (Santa Cruz, sc-1616), Peroxidase-AffiniPure Goat Anti-Mouse IgG (H+L) Antibody (Jackson ImmunoResearch Labs, 115-035-003), Peroxidase-AffiniPure Goat Anti-Rabbit IgG (H+L) Antibody (Jackson ImmunoResearch Labs, 111-035-003). For CO-IP experiment, the following agents and antibodies were used, Protein G PLUS-Agarose Antibody (Santa Cruz, sc-2002), Normal Mouse IgG Antibody (Santa Cruz, sc-2025), anti-myc (CST, 2276S), Peroxidase-AffiniPure Goat Anti-Mouse IgG, Light Chain Specific Antibody (Jackson ImmunoResearch Labs, 115-035-174).
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