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Nanoscope analysis version 2

Manufactured by Bruker

NanoScope Analysis version 2.0 is a software solution developed by Bruker for the analysis and processing of data acquired from scanning probe microscopy (SPM) instruments. It provides advanced tools for visualizing, measuring, and analyzing surface topography and other sample properties at the nanoscale.

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2 protocols using nanoscope analysis version 2

1

AFM Imaging of Enamel Proteins

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All in-air and in-fluid AFM imaging were performed with a Dimension Icon AFM (Bruker, USA) in Peak Force Mode. The tips selected for in-air AFM imaging and in-fluid imaging were ScanAsyst-Air (k = 0.4 N/m, tip radius ~2 nm; resonance frequency 70 kHz in air) and ScanAsyst-Fluid+ (k = 0.7 N/m, tip radius ~2 nm; resonance frequency 150 kHz in air) (Bruker, https://www.brukerafmprobes.com/), respectively. Amel and Ambn were first mixed in Tris-HCl buffer solution (25 mM, 150 mM NaCl, pH 7.4), in which the concentration of Amel was fixed at 50 μg/mL and the concentrations of Ambn were adjusted to obtain various ratios including 1:10, 1:5, 1:3, 1:2, and 1:1 by weight. In addition, 50 μg/mL Amel alone and 25 μg/mL Ambn alone solutions were prepared. These protein solutions were dropped onto a freshly cleaved muscovite mica disc (diameter 9.9 mm, Ted Pella, Inc.) and examined in fluid immediately using AFM.
A 50 μg/mL Amel solution in Tris-HCl buffer was dropped onto the mica disc for 5 min, rinsed with UPW, and then dried with argon. The same procedure was performed on 25 μg/mL Ambn, 17 μg/mL AB2, 17 μg/mL AB4, 17 μg/mL AmbnΔ5, 17 μg/mL AB2 and 50 μg/mL Amel, 17 μg/mL AB4 and 50 μg/mL Amel, and 17 μg/mL AmbnΔ5 and 50 μg/mL Amel. These samples were imaged in air using AFM. The images were analyzed using the image processing software package NanoScope Analysis version 2.0 (Bruker).
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2

AFM Imaging of Amelogenin and Ameloblastin Interactions

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All in-air and in-fluid AFM imaging were performed with a Dimension Icon AFM (Bruker, USA) in Peak Force Mode. The tips selected for in-air AFM imaging and in-fluid imaging were ScanAsyst-Air (k = 0.4 N/m, tip radius ~2 nm; resonance frequency 70 kHz in air) and ScanAsyst-Fluid + (k = 0.7 N/m, tip radius ~2 nm; resonance frequency 150 kHz in air) (Bruker, https://www.brukerafmprobes.com/), respectively. Amel and Ambn were first mixed in Tris-HCl buffer solution (25 mM, 150 mM NaCl, pH 7.4), in which the concentration of Amel was fixed at 50 μg/mL and the concentrations of Ambn were adjusted to obtain various ratios including 1:10, 1:5, 1:3, 1:2, and 1:1 by weight. In addition, 50 μg/mL Amel alone and 25 μg/mL Ambn alone solutions were prepared. These protein solutions were dropped onto a freshly cleaved muscovite mica disc (diameter 9.9 mm, Ted Pella, Inc.) and examined in fluid immediately using AFM.
A 50 μg/mL Amel solution in Tris-HCl buffer was dropped onto the mica disc for 5 min, rinsed with UPW, and then dried with argon. The same procedure was performed on 25 μg/mL Ambn, 17 μg/mL AB2, 17 μg/mL AB4, 17 μg/mL AmbnΔ5, 17 μg/mL AB2 and 50 μg/mL Amel, 17 μg/mL AB4 and 50 μg/mL Amel, and 17 μg/mL AmbnΔ5 and 50 μg/mL Amel. These samples were imaged in air using AFM. The images were analyzed using the image processing software package NanoScope Analysis version 2.0 (Bruker).
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