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4 protocols using alexa fluor 594

1

Two-photon Imaging of Peritoneal Immune Dynamics

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Two-photon microscopy of the peritoneal subserosa was performed as previously described.49 (link) Mice were anesthetized with isoflurane, the parietal peritoneal wall was exposed through a midline incision, and sterile, pre-warmed HBSS buffer containing 0.2 μg anti-CD88 Alexa Fluor 594 (Biolegend; clone 20/70) was applied to the tissue surface after it had been mounted on a special base plate. After a 10-min rest period, 100 ng of LPS in HBSS was applied topically to the peritoneal serosa before a sterilized coverslip was placed on the surface. Immediately afterward, dynamic imaging was started on a Zeiss 710 microscope equipped with a femtosecond pulsed Chameleon laser (Coherent) and a 20× water immersion objective (NA 1.0, Zeiss). Data were acquired at a resolution of 512×512 (16 bits) in batches of 12 images, each 3 mm apart, at a frame rate of 968 ms using ZEN software (Zen 2012; Zeiss). For imaging, the laser was set to 930 nm with a power of approximately 80 mW and the following filter cubes were used: GFP (565DCXR, 525/50; Zeiss), Alexa Fluor 594 (565DCXR, 575–640; Zeiss), SHG (495DCLP, 447/60; Zeiss). Raw imaging data were processed and analyzed with Imaris (Bitplane).
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2

Sperm Flagellar and Acrosomal Protein Analysis

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A sperm sample from patient AY0283 and two normal sperm samples fixed with 4% PFA were applied to slides, permeabilized with 0.1% Triton X-100 (BS084, Biosharp) for 10 min, and then blocked with 10% donkey serum for 2 h at 37°C. To analyze the location and expression of DNAH6 in spermatozoa and the changes in flagellar-associated and acrosome-associated proteins, anti-DNAH6 (rabbit, 1:100, ab122333, Abcam, Cambridge, UK), anti-DNAH1 (rabbit, 1:100, ab122367, Abcam), anti-DNAI2 (rabbit, 1:200, 17533-1-AP, Proteintech), anti-SPAG6 (rabbit, 1:200, HPA038440, Sigma-Aldrich), anti-RSPH1 (rabbit, 1:100, HPA017382, Sigma-Aldrich), and anti-AKAP4 (rabbit, 1:200, HPA020046, Sigma-Aldrich) antibody were co-incubated with monoclonal anti-acetylated-tubulin antibody (mouse, 1:500, T6793, Sigma-Aldrich) at 4°C for 16 h. Anti-ACTL7A (rabbit, 1:100, HPA021624, Sigma-Aldrich) and anti-acrosin antibodies (rabbit, 1:200, NBP2-14260, Novus) were also incubated separately at 4°C for 16 h. We used Alexa Fluor 488 anti-mouse antibody (1:800, Jackson, Lancaster, PA, USA), Alexa Fluor 594 anti-rabbit antibody (1:800, Jackson), and Hoechst 33 342 (1:500, Thermo Scientific) as secondary antibodies. The stained samples were observed with a laser scanning confocal microscope (LSM800, Carl Zeiss AG) in selected channels (Alexa Fluor 594, Alexa Fluor 488, and Hoechst 33 342).
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3

Two-photon Imaging of Peritoneal Immune Dynamics

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Two-photon microscopy of the peritoneal subserosa was performed as previously described.49 (link) Mice were anesthetized with isoflurane, the parietal peritoneal wall was exposed through a midline incision, and sterile, pre-warmed HBSS buffer containing 0.2 μg anti-CD88 Alexa Fluor 594 (Biolegend; clone 20/70) was applied to the tissue surface after it had been mounted on a special base plate. After a 10-min rest period, 100 ng of LPS in HBSS was applied topically to the peritoneal serosa before a sterilized coverslip was placed on the surface. Immediately afterward, dynamic imaging was started on a Zeiss 710 microscope equipped with a femtosecond pulsed Chameleon laser (Coherent) and a 20× water immersion objective (NA 1.0, Zeiss). Data were acquired at a resolution of 512×512 (16 bits) in batches of 12 images, each 3 mm apart, at a frame rate of 968 ms using ZEN software (Zen 2012; Zeiss). For imaging, the laser was set to 930 nm with a power of approximately 80 mW and the following filter cubes were used: GFP (565DCXR, 525/50; Zeiss), Alexa Fluor 594 (565DCXR, 575–640; Zeiss), SHG (495DCLP, 447/60; Zeiss). Raw imaging data were processed and analyzed with Imaris (Bitplane).
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4

Automated Detection of Milky Spots in Omentum

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Whole omenta were fixed for 2 h in 4% paraformaldehyde, washed in PBS and incubated for 1 h at room temperature in PBS containing 5% BSA and 0.2% Triton-X. They were then stained with a 1:100 dilution of rat anti-mouse B220 antibody (clone RA3-6B2, BioLegend) in PBS containing 5% BSA for 4 h at 4 °C. After washing, the omenta were incubated with a 1:500 dilution of donkey anti-rat IgG coupled to Alexa Fluor 594 (cat. no. A-21209, Thermo Fisher Scientific) at 4 °C overnight. After a 20 min incubation with 20 µM Hoechst 33342 (Thermo Fisher Scientific), the omenta were washed and mounted on a slide in ProLong Gold antifade reagent (Invitrogen, Waltham, MA, USA). Images were acquired with an Axio Scan.Z1 slide scanner (Carl Zeiss, Stuttgart, Germany) using the 353/465 nm (Hoechst) and the 577/603 nm (Alexa Fluor 594) channels. The images were analyzed using ZEN Blue software (Carl Zeiss) with the ZEN Intellisis software extension. This software extension was used to predict ‘milky spot’ and ‘non-milky spot’ areas of omenta using artificial intelligence based on previous user-defined examples.
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