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14 protocols using glial fibrillary acidic protein (gfap)

1

Protein Expression and Immunofluorescence Staining Protocol

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IB analysis of protein expression and immunofluorescence staining on cells or tissue sections were performed as previously described (Bao et al., 2006a (link); Guryanova et al., 2011 (link); Cheng et al., 2013 (link); Zhou et al., 2015 (link)). Specific antibodies against USP13 (Abcam), c-Myc (Cell Signaling Technology or Santa Cruz Biotechnology, Inc.), SOX2 and OLIG2 (EMD Millipore or Santa Cruz Biotechnology, Inc.), Flag and α-tubulin (Sigma-Aldrich), GFAP (BioLegend or BD), MAP2 (Covance), TUJ1 (Covance), CD31 (Dako), FBXL14 (Santa Cruz Biotechnology, Inc.), CD133 (Miltenyi Biotec), ubiquitin (BioLegend), hemagglutinin (HA; Santa Cruz Biotechnology, Inc.), and Ki-67 (Abcam) were used for IB analysis or immunofluorescent staining. IHC staining on tumor and normal tissue sections was performed with an avidin–biotin complex kit and a 3,3′-diaminobenzine detection kit (Vector Laboratories) as previously described (Bao et al., 2006b (link); Guryanova et al., 2011 (link); Zhou et al., 2015 (link)).
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2

Biomarkers in Traumatic Brain Injury

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Blood samples were obtained within 12 h from patients with TBI and on day 7 after the TBI, before the serum was stored at -80˚C until further quantification analysis. IL-6 (Cat. no. 430504; BioLegend, Inc.), IL-8 (Cat. no. 431504; BioLegend, Inc.) and IL-10 (Cat. no. 430604; BioLegend, Inc.), GFAP (cat. no. E-EL-H6093; Elabscience Biotechnology, Inc.) and UCH-L1 (cat. no. E-EL-H2377; Elabscience Biotechnology Inc.) were measured through ELISA according to manufacturer's protocols. All specimens were assayed in duplicate. The sensitivities of the assays were 4 pg/ml for IL-6, 8 pg/ml for IL-8, 2 pg/ml for IL-10, 9.38 pg/ml for GFAP and 46.88 pg/ml for UCH-L1. The detection range was 7.8-500 pg/ml for IL-6, 15.6-1,000 pg/ml for IL-8, 3.9-250 pg/ml for IL-10, 15.63-1,000 pg/ml for GFAP and 78.13-5,000 pg/ml for UCH-L1.
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3

Protein Expression and Immunostaining Protocol

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IB analysis of protein expression and IF staining of cells or tissue sections were performed as described [8 (link), 20 (link), 43 (link)]. Specific antibodies against ZFX (Cell Signaling or Sigma-Aldrich), c-Myc (Cell Signaling or Santa Cruz), SOX2 and OLIG2 (Millipore or Santa cruse), Flag and α-tubulin (Sigma-Aldrich), GFAP (Biolegend or BD Bioscience), MAP2 (Covance), TUJ1 (Covance), CD31 (Dako), Tbx3 (Abcam) and Tcl1 (Norvus) were used for IB analysis or IF staining. IHC staining on tumor and normal tissue sections was performed with an ABC kit using DAB (3,3’-Diaminobenzine) detection (Vector Lab) as previously described [15 (link), 43 (link)]. A specific antibody against ZFX (Sigma-Aldrich) was used for IHC on paraffin embedded tumor and normal brain tissue sections including tissue microarrays (US Biomax).
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4

Validated Antibody for GCPII Detection

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We used the mouse PSMA/FOLH1/NAALADase I/GCPII antibody raised against Lys44-Ala750 which contains the extracellular domain of GCPII (MAB4234; R&D Systems; 1:50). The antibody recognizes a very specific band for GCPII by western blotting with no other non-specific bands. The recognition of PSMA/FOLH1/GCPII was confirmed using antigen-down ELISA (R&D Systems). In direct ELISA’s, the antibody shows less than 10% cross-reactivity with rhNAALADase-like 2 and no cross-reactivity with rhNAALADase-like 1, rhNAALADase-like 3, rmNAALADase I, or rmNAALAase-like 2. The multiple label immunofluorescence used the following additional antibodies: GFAP (1:500, BioLegend, Cat# 829401), NeuN (1:300, EMD Millipore, Cat# ABN78), and Iba1/AIF-1 (1:300, Cell Signaling Tech, Cat# 17198 T).
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5

Immunohistochemistry of Cultured Cells and Brain Slices

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Cultured cells or brain slices (30 μm) were fixed with 4% paraformaldehyde followed by three washes in PBS and permeabilized with 0.1% Triton X-100 for 10 min (except for O4, O1 immunostainning) then blocked in 10% goat serum (Invitrogen Corp. USA) for 1 h following incubation with the primary antibody overnight at 4 °C. Primary antibodies were diluted in blocking solutions as follows: mouse anti-MBP (Biolegend, USA; 1:500), mouse anti-APC, CC1 clone (Millipore, USA; 1:500), mouse anti-O4 (R&D Systems Inc, USA, 1:800), mouse anti-O1 (R&D Systems Inc, USA, 1:800), rabbit anti-PDGFRα (Cell Signalling Technology, USA; 1:500), rabbit anti-glial fibrillary acidic protein (GFAP, Biolegend, USA; 1:500) mouse anti-BrdU (Sigma St Louis, USA; 1:500). The tissue or cells were then washed with PBS and incubate in Alexa Flour-conjugated secondary antibodies (Invitrogen Corp. USA; 1:500) for 1 h. Images were obtained using Olympus photomicroscope and analyzed using Image-Pro plus 6.0 software.
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6

Characterization of GCPII Antibody

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We used the mouse PSMA/FOLH1/NAALADase I/GCPII antibody raised against Lys44-Ala750 which contains the extracellular domain of GCPII (MAB4234; R&D Systems; 1:50). The antibody recognizes a very specific band for GCPII by western blotting with no other non-specific bands. The recognition of PSMA/FOLH1/GCPII was confirmed using antigen-down ELISA (R&D Systems). In direct ELISA’s, the antibody shows less than 10% cross-reactivity with rhNAALADase-like 2 and no cross-reactivity with rhNAALADase-like 1, rhNAALADase-like 3, rmNAALADase I, or rmNAALAase-like 2. The multiple label immunofluorescence used the following additional antibodies: GFAP (1:500, BioLegend, Cat# 829401), NeuN (1:300, EMD Millipore, Cat# ABN78), and Iba1/AIF-1 (1:300, Cell Signaling Tech, Cat# 17198 T).
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7

Paraffin-Embedded Brain Slice Immunohistochemistry

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4d after brain slice preparation the tissue was fixed and pre-embedded in 2% agar (Carl Roth # 5210.3)- 2.5% gelatin (Merck Millipore # 1040700500; in PBS) without sponge pads and subsequently processed for paraffin embedding. 4-6 μm thick sections were stained according to standard immunohistochemistry protocols. The antibodies used were specific for: glial fibrillary acidic protein (GFAP) (Biolegend # 644701; diluted 1:500), laminin (Progen Biotech # 10765; diluted 1:200), myelin basic protein (MBP) (Abcam # 7349; diluted 1:200) and ionized calcium-binding adapter molecule 1 (Iba1) (Wako # 019–19,741; diluted 1:500).
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8

Isolation, Culturing, and Co-culture of Schwann Cells and Neurons

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For SC dissociation and isolation, paired MPGs (n = 4 rats) were excised, digested in collagenase/dispase/hyaluronidase, and dissociated by gentle trituration. Dissociated SCs were suspended in a SC medium containing Dulbecco’s Modified Eagle Medium with d-valine (HiMedia, West Chester, PA) as previously described.11 (link) Once confluent, SCs were plated onto individual glass coverslips coated with laminin and poly-l-lysine, covered with SC medium, and again incubated to confluence for 24-48 hours. Dissociated neurons from control and diabetic rats were plated on top of the confluent SC and cocultured for 48 hours in a 50:50 mixture of neurobasal and SC media which was changed every 24 hours. After 48 hours, cocultured neurons and SCs were fixed and stained with primary antibodies specific for TUJ1 (1:100, rabbit; Sigma-Aldrich), GFAP (1:200 anti-mouse; BioLegend, San Diego, CA), or S100 (1:200; anti-chicken, MyBioSource, San Diego, CA) captured as previously described, and the longest neurite from each neuron was measured and counterstained with DAPI.
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9

Flow Cytometric Characterization of Neural Stem Cells

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Flow cytometric analysis was performed as previously described(Hill et al. 2018 ). Antibodies used were against human Sox-2 (BD Biosciences, San Jose, CA, USA, Cat# 561610 Lot# RRID:AB_10712763), nestin (BD Biosciences, Cat# 560393 Lot#3305985 RRID:AB_1645170), S100β (Abcam, Cat#ab196442 Lot#GR206303–4 RRID:AB_2722596), βIII-Tubulin (BD Biosciences, Cat# 560394 Lot# 7132512 RRID:AB_1645400), DCX (BD Biosciences, Cat# 561505 Lot# 7269884 RRID:AB_10643766), and GFAP (Biolegend, San Diego, CA, USA; Cat# 644710 Lot# B249852 RRID:AB_2566685). Cytometric acquisition was performed using a BD FACS Canto II flow cytometer and analyzed with FlowJo software (Tree Star, Inc., Ashland, OR, USA; RRID:SCR_008520).
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10

Immunohistochemical Analysis of Brain Tissue

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PFA fixed cells or 6-µm formalin fixed paraffin-embedded sections were stained according to standard immunohistochemistry protocols. The following antibodies were used: mCherry (abcam, ab167453), Iba1 (Wako, 01919741), Cd44 (Abcam 119863), CD31 (Abcam, ab28364), GFAP (BioLegend, 644701). Secondary antibodies were from Thermo Fischer Scientific. For brain tissue analysis, images were acquired with Zeiss Axio-Scan.Z1 using ZEN software (Zeiss, Oberkochen, Germany). Cultured cells were imaged with a MEA53100 Eclipse Ti-E inverted microscope (Nikon, Japan). Analysis were performed using ImageJ.
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