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Protease inhibitor and phosphatase inhibitor

Manufactured by Thermo Fisher Scientific
Sourced in United States, China

Protease inhibitor and phosphatase inhibitor are laboratory reagents used to maintain the integrity of proteins in biological samples. Protease inhibitor prevents the degradation of proteins by proteolytic enzymes, while phosphatase inhibitor inhibits the activity of phosphatases, which can alter the phosphorylation state of proteins. These inhibitors are commonly used in sample preparation and analysis to preserve the native structure and function of proteins.

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23 protocols using protease inhibitor and phosphatase inhibitor

1

Immunoblotting and Co-Immunoprecipitation Protocol

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Immunoblotting and co‐immunoprecipitation (co‐IP) experiments were performed as described previously.20 Cells were harvested and total cell lysates were obtained using IP‐lysis buffer (protease inhibitor cocktail, 10% glycerol, 1 mM EDTA l, 1% Triton X‐100, 150 mM NaCl and 50 mM Tris‐HCl, pH7.4) with phosphatase inhibitor and protease inhibitor (Thermo). Total lysates were then fractionated by SDS‐PAGE and transferred to PVDF membranes. After blocking with 5% skim milk, the membranes were incubated with primary antibodies overnight at 4°C. Then, the blots were washed three times with Tris Buffered Saline + Tween (TBST) and reacted with the HRP‐conjugated mouse and rabbit secondary antibodies for 1 h at room temperature. The immunoreactive bands were analysed using ImageJ software.
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2

Western Blot Analysis of Protein Expression

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At indicated times post infection, cells were washed with PBS and lysed in radioimmunoprecipitation assay (RIPA) buffer (Thermo Scientific). Phosphatase inhibitor and Protease inhibitor (Thermo Scientific) were added in the RIPA according to the manufacturer's instructions. The concentration of the lysates were determined by a Pierce BCA Protein Assay kit based on the bicinchoninic acid spectrophotometric method (Thermo Scientific). After centrifugation at 12000×g for 10 min, the supernatant (15-50 ug of protein) was fractionated by SDS-PAGE (10%-12% gradient), the separated proteins were transferred to PVDF (Merck Millipore), the membranes were blocked for 2h in Tris-buffered saline (TBS) containing 5% nonfat dry milk, and reacted with the indicated primary antibodies at 4°C overnight. Membranes were exposed to species specific horseradish peroxidase (HRP)-conjugated secondary antibodies (dilution 1:5000) followed by enhanced chemiluminescence (ECL, Thermo Scientific) detection by autoradiography. Western blotting was quantified by Quantity One (Quantity One 1-D Analysis Software 170-9600, Bio-Rad). The intensity of the bands in terms of density was measured and normalized against GAPDH expression. All data were expressed as means ± SD of three independent experiments.
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3

LPS-Induced Signaling Pathway Analysis

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The cells were cultured in αMEM or rDFSC-CM with 0.5 mg/L LPS for 0, 15, 30, 60, and 120 min, and protein was then collected by lysis with phosphatase inhibitor and protease inhibitor (Thermo Fisher Scientific, USA). The protein contents were quantified using a bicinchoninic acid protein assay kit (Biocolors, China). Thirty micrograms of proteins was separated on sodium dodecyl sulfate-polyacrylamide gels and transferred to nitrocellulose membranes (Millipore, USA). The membranes were probed with the following primary antibodies overnight at 4 °C: anti-p-p38 MAPK, anti-p38 MAPK, anti-p-ERK 1/2, anti-ERK1/2, anti-p-SAPK/JNK, anti-SAPK/JNK, anti-p-p65 NF-κB, anti-p65 NF-κB (1:1000, Cell Signaling Technology, USA), and anti-vinculin (1:5000, Abcam, USA). The membranes were subsequently washed for 30 min and incubated with horseradish peroxidase-conjugated secondary antibody (Cell Signaling Technology, USA) at 1:5000 dilution. The immunoreactive proteins were visualized by enhanced chemiluminescence (ECL; Millipore, USA), and the densities of the protein bands were quantified using ImageJ version 1.50i software (Bethesda, USA).
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4

Western Blot Analysis of Signaling Proteins

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BM cells were lysed in a RIPA Buffer (Biosesang, Seongnam, Republic of Korea) including a protease inhibitor and phosphatase inhibitor (Thermo Fisher Scientific, Waltham, MA, USA), and they were sonicated on ice. After centrifugation, clear cell lysates were acquired and assayed for protein concentration. Following denaturation, 40 µg of protein was separated on a 4–12% SDS-PAGE gel (Invitrogen, Waltham, MA, USA) at 150 V for 90 min and transferred to a methanol-soaked PVDF membrane (Invitrogen) at 40 V for 100 min. The membranes were blocked with 3% bovine serum albumin for 1 h and then incubated at 4 °C overnight with anti-phopho-SAPK/JNK (Thr183/Tyr185) (#9255, Cell Signaling Technology, Danvers, MA, USA), anti-phopho-p38 MAPK (Thr180/Tyr185) (#9216, Cell Signaling Technology), anti-SAPK/JNK (#9252, Cell Signaling Technology) and anti-p38 MAPK (#9212, Cell Signaling Technology) Abs. The membranes were then incubated with anti-mouse or anti-rabbit IgG Abs conjugated to horseradish peroxidase (HRP) at room temperature for 1 h. After stripping at 55 °C for 30 min, they were incubated at room temperature for 1 h with anti-β-actin Abs (Santa Cruz Biotechnology, Dallas, TX, USA) and subsequently with anti-mouse HRP Abs (Cell Signaling Technology). The protein expression levels were normalized to the corresponding β-actin levels.
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5

Protein Extraction and Western Blot Analysis

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Cells were harvested and suspended in RIPA lysis buffer (Thermo, Hercules, CA, USA) containing a mixture of protease inhibitor and phosphatase inhibitor (GenDEPOT, CA, USA) followed by centrifugation at 13,000 rpm for 30 min at 4 °C. Protein content of the supernatant was determined using a BCA kit (Thermo). Proteins (30 µg per well) were separated by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) using a 10% PAGE gel with a Tris-glycine-SDS buffer and transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad, MA, USA). These membranes were blocked with 5% skim milk (Sigma, St. Louis, MO, USA) at room temperature for 2 hrs followed by incubation with primary antibodies diluted with 3% BSA in Tris buffered saline containing 0.1% Tween 20 (TBS-T) overnight at 4 °C. Membranes were then washed with TBS-T and incubated with HRP-conjugated secondary antibody at room temperature for 2 hrs. Signals were detected using Western Blotting Luminol Reagent (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA).
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6

Western Blot Protein Analysis Protocol

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After removing the medium, cells were washed thoroughly with ice-cold PBS. Then the cells were harvested in lysis buffer (50 mM Tris-HCl, pH 7.4, 150 mM sodium chloride, 1% NP40, 1 mM EDTA, 5 mM sodium fluoride, 0.25% sodium deoxycholate, 5 mM sodium orthovanadate, 0.4% SDS, 1 mM PMSF) containing protease inhibitor and phosphatase inhibitor (Thermo, USA) for 2 h at 4°C. The concentration of proteins was determined by the Bradford assay then cell lysates were subjected to 10% or 12% SDS-PAGE and transferred to nitrocellulose membranes (Whatman International, Ltd.). The membrane was blocked with 5% non-fat milk powder in TBST buffer (20 mM Tris–HCl, pH 7.4, 150 mM NaCl, 0.1% Tween 20) for 1h at room temperature then was incubated with primary antibodies at 4°C overnight. The membrane was incubated with HRP-conjugated secondary antibodies for 1 h at room temperature, the antibody-antigen complex on the membrane was visualized by enhanced chemiluminescence system(Thermo).
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7

Western Blot Analysis of Autophagy Proteins

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Total proteins were extracted from cells using RIPA lysis and extraction buffer (Beyotime Institute of Biotechnology) containing protease inhibitor and phosphatase inhibitor (Thermo Fisher Scientific, Inc.). Equivalent amounts of protein were separated via SDS-PAGE (12% gel), and transferred onto Immobilon-NC Membranes (EMD Millipore). After blocking with 5% non-fat milk solution for 1 h at room temperature, the membranes were washed with TBS-Tween-20 (0.1%, v/v) and then incubated with primary antibody at 4°C overnight followed by incubating with horseradish peroxidase-conjugated secondary antibody for 1 h at room temperature. ATG7, Beclin, LC3 and β-actin antibodies were purchased from Abcam. β-actin served as a loading control and protein bands were quantified using Image J Software. The antibody-antigen complexes were visualized via chemiluminescence with the enhanced ECL immunoblotting system (Tanon).
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8

Western Blotting Analysis of Signaling Pathways

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Whole‐cell lysates were prepared in M‐PER buffer supplemented with protease inhibitor and phosphatase inhibitor (Thermo Fisher Scientific, Waltham, MA, USA), resolved by SDS/PAGE, and blotted with indicated antibodies. SuperSignal West Pico Chemiluminescent Substrate and SuperSignal Western Blot Enhancer (Thermo Fisher Scientific) were used to enhance blotting signal when needed. The following antibodies were used in this study: anti‐MAP4K4, anti‐phospho‐ERK1/2, anti‐phospho‐JNK, anti‐JNK, anti‐phospho‐p38, anti‐p38, anti‐AKT, anti‐phospho‐AKT, anti‐MEK1/2, anti‐phospho‐MEK1/2, anti‐RAS and anti‐PP2A‐C (Cell Signaling Technology, Danvers, MA, USA); anti‐ERK1/2, anti‐GAPDH, anti‐β‐actin, anti‐PP2A‐B56β, and anti‐MKP3 (Santa Cruz Biotechnology, Dallas, TX, USA); anti‐6Χ HIS (Immunology Consultants Laboratory, Inc., Lake Oswego, OR, USA). Erlotinib and trametinib were purchased from Selleck Chemicals (Houston, TX, USA). The protein phosphatase 2 (PP2A) inhibitor okadaic acid (OA) was purchased from Sigma Aldrich. The PP2A activator FTY720 was purchased from Cayman Chemical (Ann Arbor, MI, USA). MAP4K4 inhibitor PF‐06260933 was purchased from Tocris Bioscience (Avonmouth, Bristol, UK). EGF was obtained from Thermo Fisher Scientific.
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9

POSTN Regulates Focal Adhesion Kinase

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HRECs were seeded in collagen-coated six-well plates. After starvation with serum-free medium for 24 hr, the cells were cultured with POSTN following treatment with control IgG, integrin αvβ3 Ab, integrin αvβ5 Ab, or LY294002 for 30 min. Total cell lysates of HRECs were extracted using lysis buffer with protease inhibitor and phosphatase inhibitor (Thermo). The extracted cell lysates were added to 4%–12% SDS-NuPAGE, and the blots were incubated with antibodies against phosphorylated FAK (Tyr397, 3283: 1:1,000 dilution; Cell Signaling Technology), FAK (3285: 1:1,000 dilution; Cell Signaling Technology), phosphorylated Akt (Ser473, 4060: 1:2,000 dilution; Cell Signaling Technology), Akt (4691: 1:1,000 dilution; Cell Signaling Technology), or ILK1 (3862: 1:1,000 dilution; Cell Signaling Technology). The signals were made visible with SuperSignal West Femto Maximum Sensitivity Substrate (Thermo) detection system. Differences in lane loading were determined by blotting the membranes with an Ab against β-actin (4970: 1:1,000; Cell Signaling Technology).
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10

Hippocampal Protein Extraction and Western Blot

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Hippocampal was homogenized in RIPA buffer (150 mM NaCl, 1.0% NP-40, 0.5% sodium deoxycholate, 0.1% SDS, 50 mM Tris-HCL, PH 8.0) containing protease inhibitor and phosphatase inhibitor (Thermo). Lysates were then dissolved in 2 X laemmli sample buffer (Biorad), and boiled at 95 °C for 5 minutes. For western blot, lysates (50 ug protein) were added in SDS-PAGE and electroblotted onto PVDF membrane. The membranes were blocked with 5% skim milk in TBS-T, and then probed with desired antibodies. Primary antibodies against p-p38 (Cell Signaling), p38(Anbo) and β-actin (Sigma) were used. Immobilon Western Chemiluminescent HRP Substrate (Merck) was used to reveal the antibody-antigen complexes.
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