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9 protocols using ep1808y

1

Antioxidant Assays for C2C12 Cells

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C2C12 cells were preserved by our laboratory. Dried grubs were obtained from Tongrentang Chinese Medicine (China). Papain, low melt agarose (A8350), normal melting point agarose (A8201), goat serum (SL038), DAPI (C0065), RIPA buffer (R0010) was purchased from Solarbio (Beijing, China). Dulbecco’s modified Eagle’s media (DMEM) (Sigma–Aldrich, D0822), Tertiary butylhydroquinone (TBHQ) (Sigma–Aldrich, 112941), MTT was purchased from Sigma–Aldrich (M2003, St. Louis, USA). Fetal bovine serum (FBS) was purchased from Gibco Life Technologies (Australia). TRIzol reagent was obtained from Invitrogen (15596018, Shanghai, China). Antibodies against NRF2 (EP1808Y), HO-1 (EP1391Y) and β-actin (ab8227) were purchased from Abcam (Cambridge, UK). Lamin B antibody was obtained from Boster (PB9611, Wuhan, China). SOD (A001-1-2), CAT (A007-1-1), GSH-Px (A005-1-2) and Malondialdehyde (MDA) (A003-1-2) kits were purchased from Nanjing Jiancheng Biological Product (Nanjing, China).
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2

Nrf2 Immunohistochemical Analysis

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A rabbit monoclonal antibody (EP1808Y) which specifically reacts with human Nrf2 (IgG2) was purchased from Abcam, Inc. (Cambridge, MA). Immunohistological analysis of Nrf2 protein expression was performed as previously described. According to our studies, with sections of endometrial serous carcinoma with strong Nrf2 expression serving as positive control, and a criteria based on the positive score index we defined and applied previously[13 (link)]; only cases whose indices above 25 were regarded as positive.
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3

Quantitative Protein Expression Analysis

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Tissue proteins were extracted using TRI reagent, according to the manufacturer protocol. Proteins were resolved by SDS-PAGE (10%) and transferred to PVDF membranes (Bio-Rad, USA). Membranes were blocked with different blocking buffer containing 10% skim milk (Millipore, USA), and 5% TBST. Then, they were respectively incubated with primary antibodies for 1.5 h (Anti-Nrf2 antibody [1:1000, EP1808Y, Abcam, UK], Anti-Glucose Transporter GLUT4 [1:2000, ab188317, Abcam, UK], anti- β actin antibody (1:500, Sigma, USA), anti-Keap1 antibody [1:1000, ab119403, Abcam, UK] and secondary antibodies (Goat Anti-Rabbit IgG H&L (HRP) (1:20,000, Santa Cruz SC-2301, HRP-conjugated goat antimouse IgG (1:5000, Dako, Japan P0447), for 1 h at room temperature. Blots were detected by an Amersham ECL Advance Western Blotting Detection Kit (GE Healthcare, USA). Image J software (National Institutes of Health, Bethesda, MD, USA) was utilized for quantification of the intensity band.
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4

Immunoblotting Antibody Validation Protocol

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The following antibodies were used for immunoblotting: rabbit polyclonal C-20 (Santa Cruz, CA), mouse monoclonal (M01) clone 1 F3 (Abnova, Taiwan), and rabbit monoclonal EP1808Y (Abcam, Cambridge, UK) for Nrf2; Actin was from Calbiochem/MerckMillipore (Watford, UK); NQO1 was from Novus Biologicals (Cambridge, UK); G6PD was from Bethyl (Montgomery, TX); HIF-1α was from BD Biosciences (San Jose, CA); Cleaved PARP, total AKT, phosphorylated AKT (Ser473) (p-AKT), total ERK1/2, phosphorylated ERK1/2 (Thr202/Tyr204) (p-ERK), Cul3, Keap1, HSP90 and Lamin A/C antibodies were all from Cell Signaling Technology (Danvers, MA); GAPDH was from Advanced Immunochemical Inc. (Long Beach, CA); Secondary antibodies were from DAKO.
N-acetyl-L-cysteine, ascorbic acid, tert-butylhydroquinone, camptothecin, etoposide and staurosporine were all obtained from Sigma (Dorset, UK).
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5

Nrf2/ARE Binding Assay in Brain Microvessels

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EMSA was performed using the LightShift Chemiluminescent EMSA kit (Pierce Biotechnology, Rockford, IL, USA) according to manufacturer’s instructions. Briefly, nuclear protein extract was isolated from brain microvessels prepared from Nx, Hx, H/R, and sulforaphane treated rats. Complementary DNA oligonucleotides 5′-CGG TCA CCG TTA CTC AGC ACT TTG-3′ and 5′-CAA AGT GCT GAG TAA CGG TGA CCG-3′ (antioxidant response element recognition sequence highlighted) were purchased from Integrated DNA Technologies, end labeled with biotin, and annealed at 95 °C for 5 min. EMSA samples were prepared using 5 μg of nuclear extract in each Nrf2/ARE binding reaction. The binding reaction was incubated at room temperature for 15 min and DNA–protein complexes were resolved on a precast 6% native polyacrylamide gel in 0.5% TBE buffer. The gel was removed from the electrophoresis unit, blotted onto a nitrocellulose membrane, and incubated with streptavidin-horseradish peroxidase for 30 min. Membranes were developed using enhanced chemiluminescence. Experiments to determine specificity of EMSA reactions for the Nrf2/ARE complex were conducted by incubating binding reactions in the presence of a rabbit monoclonal anti-Nrf2 antibody (EP1808Y; 1/20 dilution; Abcam, Cambridge, MA). Control EMSA experiments were performed by adding an excess (200×) of unlabeled probe to binding reactions.
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6

Antibody Validation for Cell Biology

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Recombinant TGF-β (TGF-β3) was purchased from R&D systems (Minneapolis, MN, USA). The following antibodies were used: mouse anti-α-tubulin (DM1A; Sigma-Aldrich, St Louis, MO, USA), mouse anti-TTF-1 (8G7G3/1; Novus Biologicals, Littleton, CO, USA), rabbit anti-RBM47 (Sigma-Aldrich, HPA006347), anti-Nrf2 (EP1808Y; Abcam, Cambridge, UK), anti-KEAP1 (10503-2-AP; Proteintech, Chicago, IL, USA), anti-CUL3 (Abcam, EPR3196Y), anti-HDAC1 (2E10; Millipore, Billerica, MA, USA), anti-ATP5L (Abcam, ab126181) and anti-NDUFS6 (Abcam, ab156099).
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7

Western Blot Analysis of Nrf2 and Keap1 Proteins

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Tissue proteins were extracted using TRI reagent, according to the manufacturer protocol. Proteins were resolved by SDS-PAGE (10%) and transferred to PVDF membranes (Bio-Rad, USA). Membranes were blocked with different blocking buffer containing 10% skim milk (Millipore, USA), and 5% TBST. Then, they were respectively incubated with primary antibodies for 1.5 h (Anti-Nrf2 antibody [1:1000, EP1808Y, Abcam, UK], anti-β actin antibody (1:500, Sigma, USA), anti-Keap1 antibody [ 1:1000, ab119403, Abcam, UK] and secondary antibodies (Goat Anti-Rabbit IgG H&L (HRP) (1:20000, Santa Cruz SC-2301, HRP-conjugated goat antimouse IgG (1:5000, Dako, Japan P0447), for 1 h at room temperature. Blots were detected by an Amersham ECL Advance Western Blotting Detection Kit (GE Healthcare, USA). Image J software (National Institutes of Health, Bethesda, MD, USA) was utilized for quantification of the intensity band.
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8

Immunohistochemical Profiling of NRF2, NQO1, and ABCB1

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Formalin-fixed, paraffin-embedded (FFPE) tissue sections were assessed by immunohistochemistry (IHC) staining using an automated tissue immunostainer (Ventana BenchMark ULTRA, Roche Diagnostics, USA) and the following antibodies: NRF2 (dilution 1:100, clone EP1808Y, Abcam, Cambridge, UK), NQO1 (dilution 1:150, clone A-5, Santa Cruz Biotechnology, Santa Cruz, CA), and ATP binding cassette subfamily B member 1 (ABCB1, dilution 1:250, clone D-11, Santa Cruz Biotechnology, Santa Cruz, CA). All histological and immunohistochemical slides were reviewed independently by two pathologists. Staining intensity for NRF2, NQO1 or ABCB1 was rated on a scale of 0 (negative), 1 (weak), 2 (moderate) and 3 (strong). IHC score was calculated by multiplying the staining intensity by the percentage of positive tumor cells, which ranged from 0 to 300. The proportion of NRF2 nuclear expression was defined as the ratio of tumor cells positive for nuclear NRF2 expression (with a IHC staining scale of 1, 2, or 3) to the total number of viable tumor cells. High expression of nuclear NRF2 was defined as the proportion of NRF2 nuclear expression >20% or nuclear NRF2 IHC score >20.
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9

Western Blot Analysis of Protein Expression

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Tissue proteins were extracted using TRI reagent, according to the manufacturer protocol. Proteins were resolved by SDS-PAGE (10%) and transferred to PVDF membranes (Bio-Rad, USA). Membranes were blocked with different blocking buffer containing 10% skim milk (Millipore, USA), and 5% TBST. Then, they were respectively incubated with primary antibodies for 1.5 h (Anti-Nrf2 antibody [1:1000, EP1808Y, Abcam, UK], Anti-Glucose Transporter GLUT4 [1:2000, ab188317, Abcam, UK], anti-β actin antibody (1:500, Sigma, USA), anti-Keap1 antibody [ 1:1000, ab119403, Abcam, UK] and secondary antibodies (Goat Anti-Rabbit IgG H&L (HRP) (1:20000, Santa Cruz SC-2301, HRP-conjugated goat antimouse IgG (1:5000, Dako, Japan P0447), for 1 h at room temperature. Blots were detected by an Amersham ECL Advance Western Blotting Detection Kit (GE Healthcare, USA). Image J software (National Institutes of Health, Bethesda, MD, USA) was utilized for quanti cation of the intensity band.
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