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39 protocols using anti β actin mab

1

Western Blot Analysis of Cellular Proteins

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Western blot and detection were performed as previously reported (33 (link)). For WB application, the following antidodies were used: mAb anti-β-actin (Sigma Chemicals, Milano, Italy), mAb anti-p53 DO-1, pAb anti-Thr68 Chk2 (Cell Signaling, Beverly, MA, USA); mAb anti-TRF2 (Imgenex, San Diego, CA, USA); mAb anti-pRB (BD Pharmingen, Franklin Lakes, NJ, USA).
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2

Quantitative Protein Expression Analysis

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Protein concentration was determined using a DC (detergent-compatible) protein assay (Bio-Rad, #5000112). Samples were prepared in 20 μL at 15 μg/μL in Laemmli loading buffer. Samples were run on 7.5% Mini-PROTEAN gels (Bio-Rad, #4568025). Primary antibodies used: anti-CD276 (Cell Signaling, #14508S, Lot# 1) at 1:1000; mAb Anti-β-Actin (Sigma-Aldrich, A5441, Lot# 127M4866V, Clone AC-15) at 1:1000; anti-LAMIN B1 antibody (Abcam, #16048, Lot# GR3197369-1) at 1:10,000. Secondary antibodies used: goat anti-rabbit IgG H&L (HRP) (Abcam, #6721, Lot# GR3192725-6) at 1:20,000; goat anti-mouse IgG H&L (HRP) (Abcam, #6789, Lot# GR242773-5) at 1:5000. Densitometry was performed with ImageJ (https://imagej.nih.gov) (Schneider et al. 2012 (link)).
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3

Western Blot Analysis of Angiogenic Factors

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Cell lysates were prepared in RIPA buffer plus proteinase inhibitors. Samples containing 10 to 30 μg were separated by 8–10% SDS-PAGE. Proteins were transferred to nitrocellulose membranes, blocked in 8% nonfat milk for 1 h at room temperature, and incubated overnight at 4°C with primary antibodies mAb anti-α-SMA (A2547, Sigma-Aldrich), mAb anti-Angiogenin (sc-74528, Santa Cruz Biotechnologies), mAb anti-PCNA (sc-56, Santa Cruz Biotechnologies), rabbit polyclonal anti-cathepsin B (06-480, Millipore), rabbit polyclonal anti-MMP9 (sc-6841-R, Santa Cruz Biotechnologies), mAb anti-β-actin (A1978, Sigma-Aldrich) and developed with ECL-peroxidase system.
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4

Immunoblotting Analysis of HCMV Proteins

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Immunoblotting was performed according to standard procedures. Briefly, cells were washed in PBS and lysed in lysis buffer (50 mM Tris-HCl [pH 7.5], 150 mM NaCl, 1% [vol/vol] IGEPAL [Sigma], 1% [vol/vol] Na-deoxycholate, 0.1% [vol/vol] SDS, 1 mM DTT, 0.2 mM PMSF, 1 μg/ml leupeptin and pepstatin, 50 mM NaF, 0.1 mM Na-vanadate, and Complete protease inhibitor [Roche]). Equal amounts of protein were subjected to SDS-PAGE and transferred to nitrocellulose membranes. Immunoblot analysis was performed using mouse monoclonal antibody (MAb) anti-β-actin (Sigma), mouse MAb recognizing HCMV pUL83/pp65 (3A12; Abcam), and rabbit polyclonal anti-IκBα (sc-371; Santa Cruz). The proteins were visualized using peroxidase-coupled secondary antibodies (Dianova) and the ECL chemiluminescence system (Cell Signaling).
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5

Chromatin Immunoprecipitation Assay Protocol

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ChIP assay was performed as previously described (37 (link)). The following antibodies were used: pAb anti-TRF1 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); mAb anti-TRF2 (Imgenex, San Diego, CA, USA); pAb anti-γH2AX (ab2893, Abcam). mAb anti-β-actin (Sigma) was used as negative control of the ChIP assay.
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6

Western blot analysis of DNA repair proteins

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Western blot and detection were performed as previously reported (59 (link)). For WB application, the following antibodies were used: mAb anti-TRF2 (Millipore); mAb anti-β-actin (Sigma), mAb anti-p53 DO-1(Cell Signaling, Beverly, MA, USA); pAb anti-SIRT6 (Novus Biologicals, Littleton, CO, USA); mAb anti-c-Myc (clone 9E10; Santa Cruz Biotechnology); mAb anti-PARP1 (clone C2-10) and mAb anti-PAR (clone 10H; Alexis, Lausen, Switzerland); mAb anti-HA (clone 12CA5; Roche, IN, USA); mAb anti-SIRT1 (ab32441); pAb anti-TRF1 (Abcam); mAb anti-phospho-Histone H2AX (Ser139, clone JBW301); pAb anti-phospho-RPA (S4/S8; Bethhyl Laboratories, Montgomery, TX, USA).
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7

Immunoblotting Analysis of Protein Phosphorylation

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For immunoblotting analyses, 20E2 cells were lysed in RIPA lysis buffer supplemented with protease and phosphatase inhibitors (Roche Applied Science). Immunoblotting was performed as described previously74 (link). Primary antibodies used are: anti-myc tag mAb (Cell Signaling, Danvers, MA), C20 antibody, anti-β actin mAb (Sigma-Aldrich), anti-Phospho-Tyrosine mAb (Cell Signaling, Danvers, MA). Detection was performed with the Li-Cor Odyssey imaging system and quantitated with ImageJ software.
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8

Immunoblot Analysis of Cellular Signaling Pathways

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The primary antibodies against Akt, p-Akt (Thr308), Calnexin, and p-Akt (Ser473) were purchased from CST (Cell Signaling Technology). LC3 and TIM23 antibody were obtained from Sigma-Aldrich. Goat anti-rabbit IgG-horseradish peroxidase (HRP), goat anti-mouse IgG-HRP, and anti-β-actin mAb were purchased from Sigma-Aldrich. Anti-AIP1 antibody was obtained from Santa Cruz. Cycloheximide was obtained from MedChem Express (Princeton, NJ, USA).
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9

Western Blot Analysis of Protein Lysates

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Cells were lysed for 30 min on ice in 10 mM Tris-HCl (pH 8.0), 150 mM NaCl, 5 mM EDTA, 1% Triton X-100, and 0.1% SDS supplemented with a protease-inhibitor cocktail (Roche). Lysates were mixed with an SDS-PAGE sample buffer and boiled for 5 min. Protein concentrations were determined with a BCA protein assay kit (Pierce; Thermo Fisher Scientific, Waltham, MA, USA) using bovine serum albumin as a standard. Equal amounts of total protein were examined by Western blotting using the following antibodies: anti-Flag monoclonal antibody (mAb; M2; Sigma-Aldrich), anti-Flag polyclonal antibody (Sigma-Aldrich), anti-HA polyclonal antibody (Sigma-Aldrich), anti-β-actin mAb (Sigma-Aldrich), anti-HA mAb (MBL International, Woburn, MA, USA), anti-HIP1 mAb (Novus Biologicals, Littleton, CO, USA), anti-VprBP polyclonal Ab (Proteintech, Rosemont, IL, USA), horseradish-peroxidase (HRP)-conjugated goat anti-mouse IgG (Amersham Biosciences, Little Chalfont, UK), and HRP-conjugated goat anti-rabbit IgG (Amersham Biosciences). Signals were visualized after treatment with SuperSignal West Pico chemiluminescent substrate (Pierce; Thermo Fisher Scientific).
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10

Gn/Gc Expression and Viral-Like Particle Production

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For Gn/Gc expression, 293FT cells (Thermo Fisher Scientific) were grown in 100 mm plates and calcium-transfected with the corresponding GPC encoding plasmid. 48 h later, cell surface proteins were labeled with biotin in order to separate the biotinylated (surface proteins) from non-biotinylated (intracellular proteins) fractions using a cell surface protein isolation kit (Pierce). For protein detection by western blot, primary anti-Gc monoclonal antibody (MAb) 2H4/F6 (Godoy et al., 2009 (link)), anti-Gn monoclonal antibody 6B9/F5 (Cifuentes-Muñoz et al., 2010 (link)) or anti-β-actin MAb (Sigma) were used at 1:2500 and subsequently detected with an anti-mouse immunoglobulin horseradish peroxidase conjugate (Thermo Fisher Scientific) 1:5000 and a chemiluminescent substrate (Pierce). All these antibodies were previously characterized concerning their reactivity with negative controls (Cifuentes-Muñoz et al., 2011 (link); Cifuentes-Muñoz et al., 2010 (link)). VLPs were harvested from supernatants of 293FT cells transfected with the pI.18/GPC wild type or the different mutant constructs at 48 h post-transfection and concentrated as previously established (Acuña et al., 2014 (link)). The amount of GPC encoding plasmid used for each mutant was adjusted in order to reach similar amounts of cell surface accumulation to wild type.
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