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4 protocols using sphingo strips

1

Sphingo Strip Protein Binding Assay

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Sphingo strips (Echelon Biosciences Inc., Salt Lake City, UT) were probed with various proteins according to the manufacturer’s instructions. Briefly, the Sphingo strips were blocked at RT for 2 h in blocking buffer (10 mM Tris, 150 mM NaCl, 0.1% Tween-20 and 3% BSA, pH 8.0) and washed three times with wash buffer (10 mM Tris, 150 mM NaCl and 0.1% Tween-20, pH 8.0). Purified BmTFF3 was incubated with the Sphingo strips at RT for 1 h in blocking buffer at a concentration of 2 μg ml−1. Then, the protein solution was removed and washed three times with wash buffer. A rabbit anti-BmTFF3 polyclonal antibody (1:1000 dilution) was used as the primary antibody, and HRP-conjugated goat anti rabbit secondary antibodies (1:5000 dilution) were used as the secondary antibody. Binding was detected with the SuperSignal WestPico chemiluminescence substrate (Invitrogen).
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2

Protein-Lipid Interaction Assay

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Protein-lipid overlay assay was performed for membrane lipids and sphingolipids with Membrane Lipid Strips (P-6002; Echelon Biosciences, Salt Lake City, USA) and Sphingo Strips (S-6000; Echelon Biosciences), respectively according to the manufacturer’s instructions. In brief, the strip was incubated with the blocking buffer (PBS with 0.1% Tween-20 and 3% fatty acid-free BSA) for 1 hr at room temperature, and 1 μg/ml of recombinant murine AM protein (MBS2012437; MyBioSource) was added to the strip for 1 hr. Primary anti-mouse AM antibody (sc-366637; Santa Cruz Biotechnology), secondary HRP-conjugated anti-rabbit antibody, and Immobilon Western Chemiluminescent HRP Substrate (Merck Millipore, Billerica, USA) were used to detect positive spots. Signals were detected with ImageQuant LAS4000 Mini (GE Healthcare Life Sciences).
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3

Lipid Binding Assay for Ly49Q Protein

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The lipid binding ability of Ly49Q was examined using Sphingo Strips (Echelon Biosciences Inc.) according to the manufacturer’s instructions. In brief, Shingo Strip membranes were incubated with GST-tagged Ly49Q proteins or control GST [5 µg/ml in tris-buffered saline (TBS) containing 3% bovine serum albumin (BSA)] at 4°C overnight. After washing with TBS-T to remove unbound GST-tagged proteins, Shingo Strip membranes were further incubated with anti-GST antibody (Santa Cruz Biotechnology, Inc.) and subsequently HRP-conjugated anti-mouse IgG (Jackson Laboratory). HRP was detected with Supersignal West Femto or Supersignal West Pico chemiluminescent substrates with the LAS-3000 detection system (FUJIFILM Co., Tokyo, Japan).
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4

Lipid Binding Assay of GST and GST-MAM

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PIP-Strips and Sphingo-Strips (Echelon Biosciences) were used to test the lipid-binding properties of GST and GST-MAMHS. Each membrane was spotted with 100 pmol of each lipid species. Membranes were blocked with blocking buffer (0.1% v/v Tween 20, 5% skim milk in PBS) for 1 h at room temperature with gentle shaking. 10 μm protein was added and incubated for 1 h with shaking. Strips were washed with washing buffer (0.1% v/v Tween 20 in PBS) three times for 10 min each. GST antibody (1:1000 in blocking buffer) was applied and incubated for 1 h at room temperature with shaking. Membranes were washed with washing buffer for 10 min; this step was repeated three times. The secondary-anti mouse IgG-HRP antibody (1:5000 in blocking buffer) was added and incubated for 1 h at room temperature with shaking. Strips were then washed with washing buffer three times for 10 min each and developed using Clarity ECLTM Western substrate.
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