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12 protocols using mrc 5 fibroblasts

1

Cultivation of Human Cell Lines and Viral Propagation

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Human fetal lung fibroblasts (MRC5) were purchased from ATCC and umbilical vein cells (HUVECs) were either freshly isolated from donors or purchased from Clonetics, Lonza respectively. The MRC5 were grown in minimum essential medium (MEM, Invitrogen) supplemented with glutamine, 10% fetal bovine serum (FBS) and standard Penicillin and Streptomycin (PS). The HUVEC were cultured in EBM-2 endothelial basal medium supplemented with the EGM-2 Single Quots (Clonetics, Lonza). NIH/3T3 mouse embryonic fibroblast cells were purchased from ATCC and they were cultured in Dulbecco’s Modified Eagle’s medium (DMEM, Invitrogen) supplemented with 10% fetal bovine serum (FBS) and standard Penicillin and Streptomycin (PS). MycoAlert mycoplasma detection kit (Clonetics, Lonza) was used to verify that cells were mycoplasma-free. The HCMV clinical strain VR1814 (a kind gift from Dr Giuseppe Gerna, University of Pavia, Italy), the HSV-1 (a kind offer from Prof. Maria Masucci’s lab, Karolinska Institute, Sweden), and the MCMV Smith strain (kindly provided by Dr. Frank Stassen, University of Maastricht, Netherlands) were used for the study. The VR1814 virus was propagated in HUVECs and titrated [60 (link)] in MRC5 fibroblasts (ATCC), and frozen at -80°C.
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2

3D Alveolar Epithelial Cell Culture

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CD31CD45EPCAM+HTII-280+ alveolar epithelial cells were resuspended in CK+DCI medium, 3D medium (DMEM/F12 supplemented with 10% FBS, penicillin/streptomycin 1,000 U/mL, 1 mM HEPES, 1 mM l-glutamate, and insulin/transferrin/selenium from Sigma), or SAGM as shown at a density of 5 × 103 cells/50 μL and then mixed with 3D Matrigel (Corning) containing MRC5 fibroblasts (ATCC CCL-171) at a density of 50 × 103 cells/50 μL. A total of 100 μL of the suspension was seeded on a 0.4 mm–pore cell culture insert in a 24-well supported format (Corning). After polymerization of Matrigel, 500 μL of CK+DCI medium was added to the bottom chamber. Medium was supplemented with 10 μM Y-27632 for the first 48 hours. Medium was changed every other day. Cultures were maintained at 37°C in a humidified incubator (5% CO2).
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3

Varicella-Zoster Virus Infection Protocol

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MRC5 fibroblasts (ATCC) and MeWo cells (Sloan Kettering Institute) were grown in minimum essential medium (MEM) (Life Technologies) supplemented with 7% fetal bovine serum, l-glutamine, nonessential amino acids, and penicillin-streptomycin. When the cells were ∼90% confluent, they were inoculated with trypsin-dispersed infected cells at a ratio of one infected cell to eight uninfected cells (18 (link)). The titer of the inoculum was 1 million infectious foci/ml. The virus strain was the completely sequenced low-passage-number VZV-32 strain (50 (link)).
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4

Quantifying T-Cell Inhibition of Virus Replication

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Two hours after infection with VV, LCLs were cocultured with autologous VVSTs for 48 h at 37°C in 5% CO2. To measure T-cell inhibition of virus replication in the LCLs, the cocultures were harvested and lysed by three freeze-thaw cycles and stored at –80°C. We then added 10-fold dilutions of cell lysate (from 10–1 to 10–7) to confluent MRC-5 fibroblasts (ATCC) for 1 h at 37°C, then added fresh medium. Cells were incubated at 37°C, 5% CO2 for 24 h. Virus plaques were quantified after washing wells with PBS and adding 0.5 mL of crystal violet (Sigma-Aldrich) solution to each well for 5 min, followed by washing with PBS. Plaques were counted and virus titer estimated.
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5

Fibroblast Cell Line Characterization

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Primary human MRC-5 fibroblasts (14 weeks gestation male, fibroblasts from normal lung, normal diploid karyotype) were obtained from ATCC (LGC Standards GmbH, Wesel, Germany). HFF (primary cells, Homo sapiens, fibroblasts from foreskin, normal diploid karyotype) cells were a kind gift of T. Stamminger (University of Erlangen, [57 (link)]).
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6

Dual Fluorescent HCMV Viral Stock Propagation

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Dual fluorescently tagged TB40/E HCMV expressing IE2-2A-eGFP and UL99-mCherry was generously provided by Eain Murphy (SUNY Upstate Medical University, Syracuse, NY). Viral stocks were propagated as a P1 stock on MRC-5 fibroblasts (ATCC) and concentrated by collecting culture medium and pelleting through a sorbitol cushion (SI Appendix, Materials and Methods). Viral stock titers were obtained by a limiting dilution assay (TCID50) assay on MRC-5s. For studies involving infected cells, MRC-5 fibroblasts were plated onto six-well dishes at a density of ∼300,000 cells per well to 500,000 cells per well and allowed to grow until confluent, and growth arrested for at least 2 d for cell cycle synchronization. Cells were infected at the indicated MOI using an approximation of 1 × 106 cells per confluent well. Further information regarding titering as well as protein and nucleic acid assays can be found in SI Appendix, Materials and Methods.
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7

GF Receptor Phosphorylation Assay

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Human endothelial cells from umbilical vein (ATCC, Manassas, VA, USA) and MRC5 fibroblasts (ATCC) were serum starved overnight and stimulated with GFs, as previously described19 (link). Cells were then lysed, and that lysate was assayed for GF receptor phosphorylation via DuoSet ELISA kits (R&D Systems, Minneapolis, MN, USA) for VEGFR2, PDGFR, and EGFR, as per the manufacturer’s instructions.
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8

Alveolar Type II Cell Culture

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Human distal lung samples were obtained from a 13-month-old male donor (pediatric lung cells) and a 32-year-old male donor with no smoking history (adult lung cells). Both donors died of traumatic injuries, and their lungs were deemed unsuitable for transplantation. Distal human lung samples were treated with Liberase (MilliporeSigma) for 60 minutes at 37°C and disaggregated by pipetting and filtered through 40 μm cell strainers (Falcon) twice. Cells were stained for EpCAM (BioLegend), CD31 (BioLegend), CD45 (BioLegend), NGFR (BioLegend), and HTII-280 (Terrace Biotech). EpCAM+CD45CD31NGFRHTII-280+ cells (AT2s) were sorted on a BD Fusion FACS instrument.
After sorting, 5000 AT2s and 25000 MRC-5 fibroblasts (ATCC) in Growth Factor Reduced Matrigel (Corning) were seeded per 6.5 mm diameter Transwell cell culture inserts (Corning) with CK+DCI medium (14 (link), 21 (link)) in the basolateral compartment.
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9

Generation of iPSC Lines from Fibroblasts

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The iPSC-WT cell line was derived from MRC-5 fibroblasts (ATCC), and the iPSC-DS clones were derived from AG06872 fibroblasts (Coriell). The fibroblasts were transduced with retroviral vectors (pMXs-cMyc, pMXs-Nanog, pMXs-hOct3-4, and pMXs-Sox2; Addgene) to overexpress Oct4, Sox2, Nanog, and c-Myc transgenes. The retroviral vectors were produced by transient transfection of 293T cells. Following this, the fibroblasts were incubated for 4 h in the viral supernatants containing 5 μg/mL polybrene (Sigma). The transduced cells were then incubated for 3 weeks until development of the pluripotent clones. After isolation, the clones were grown in StemPro medium (Invitrogen) on a Matrigel® substrate (BD Biosciences). The cultures were split mechanically using the StemPro EZ Passage tool (Invitrogen).
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10

ARPE-19 Cells Maintenance and Reporter Assay

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ARPE-19 cells (ATCC, Cat #CRL-2302) were routinely maintained in a 1:1 mixture of Dulbecco’s Modified Eagle’s Medium (DMEM)/F-12 (Mediatech Inc.) with 10% fetal bovine serum (FBS) (HyClone) and 50 U/ml Penicillin-Streptomycin (Mediatech Inc.) at 37°C and 5% CO2 in a humified incubator. The ARPE-19 feedback-reporter cell line stably expresses a MIEP-IE86-IRES-GFP minimal cassette and has been previously described (Teng et al., 2012 (link)); to potentiate responsiveness, these cells are cultured in presence of Valproic Acid (VPA) 24 hours prior to perturbation (e.g. transfection). The broken feedback-reporter cell line expressing MIEP(Δcrs)-IE86-IRES-GFP (Teng et al 2012 (link)) was prepared by freshly transducing ARPE-19 cells with the reporter construct. MRC-5 fibroblasts (ATCC, Cat #CCL-171), NIH/3T3 mouse fibroblast (ATCC, Cat #CRL-1658), Telo-RF (Kirchoff et al., 2002 (link)) and Vero-E6 (Vero C1008, ATCC Cat #CRL-1586) were maintained in DMEM with 10% FBS and 50 U/ml Penicillin and Streptomycin (Mediatech Inc.). Fomivirsen (Table S1), Ganciclovir (Sigma-Aldrich, Cat #G2536) and Acyclovir (Sigma-Aldrich, Cat #A0220000) were added to media at the indicated concentrations following virus inoculate removal.
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