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8 protocols using abt 263

1

Evaluating ABT-263 in Preclinical Models

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ABT-263 was purchased from Adooq Bioscience (A10022-5; Irvine, CA, USA). ABT-263 was formulated in 10% ethanol, 30% polyethylene glycol 400, and 60% Phosal 50 PG (a dispersion of 50% phosphatidylcholine in propylene glycol) and administered by oral gavage in vivo. ABT-263 was prepared in solvents with concentrations of 0, 0.1, 1, 10, and 100 µmol/L in dimethyl sulfoxide (DMSO) for in vitro experiments.
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2

Combinatorial Drug Screening in Cancer Cells

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On day 0, GFP-labeled cancer cells (6000 cells/well in 120 μL) were plated in 96-well clear-bottom plates (Greiner, product #60-655090). On day 1, the cells were treated with 15 μL 10× of drug A and 15 μL 10× of drug B or DMSO (Sigma-Aldrich Cat #D2650-100ML; See Supplementary Table 1) using the CyBi-Well Vario 96/250 Simultaneous Pipette (CyBio). On day 4, the medium in all wells was replaced with a fresh medium containing the same drugs that were applied on day 1. GFP fluorescence was read on days 1, 4, and 7 using the Cytation 3 cell-imaging Multi-Mode reader (BioTek). Screens were carried out in duplicate. ABT-263 (Cat #A10022) and Vinorelbine (Cat #A10976) were purchased from AdooQ Bioscience.
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3

Chemical Treatments for Cell Studies

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Z-VAD-FMK, chloroquine (CQ), Rapamycin (Rapa), NU7441, Cyt387, A674563, KU60019, LY294002, PD0332991, AT7519, MK2206, CUDC907, LY2109761, GANT61, BIX 02189, Spautin-1, QNZ, LY317615, PD169316, GSK2606414, LYK974, TCK ERK 11e, SC79, MC1568, H89, ICG001, Perifosine, AEE788, ABT263, GDC-0941, FH535, PD0325025, NU7026, STF-083010, AEBSF HCl were purchased from Adooq. N-Acetyl-l-cysteine ethyl ester, DMSO, PEG300, and Tween-80 were purchased from MCE.
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4

Selective Killing of HIV-Infected T Cells

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Sorted T cell subsets with latent HIV-1 infection as above were then stimulated with 0.1 μM ingenol-3,20-dibenzonate (IDB, ENZO Life Sciences). ABT-263 (0.2 μM, Adooq Bioscience) and SAR405 (2 μM, MedChemExpress) were added as indicated. After culture for 48 h, the cells were incubated with FITC-DEVD-FMK, followed with APC-annexin V (Biolegend). The cells were then used for intracellular staining of p24 as above and analyzed by flow cytometry. Percentages of cell death were calculated by the loss of viable cells negative for annexin V and DEVD staining: (untreated – treated)/untreated x 100%.
To determine the specificity in the killing of HIV-1 infected cells, uninfected T cell subsets were labeled with CellTrace Violet dye (ThermoFisher Scientific) and mixed with corresponding HIV-1-infected T cell subsets at the ratio of 1:1. The cells were cultured with 0.2 μM BMS-626529, 0.1 μM IDB, 0.2 μM ABT-263 and 2 μM SAR405 as indicated for 48 h. The cells were incubated with DEVD-FMK and annexin V as above and analyzed by flow cytometry.
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5

Mutant KRAS Lung Cancer Cell Lines

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Two KRAS-mutant lung adenocarcinoma cell lines, NCI-H358 (G12C) and NCI-H441 (G12V), were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA) and maintained at 37°C in a humidified incubator with 5% CO2. The cells were cultured in RPMI-1640 (Nacalai Tesque, Kyoto, Japan) with 10% fetal bovine serum and antibiotics. The MEK inhibitor, trametinib (AdooQ BioScience, Irvine, CA, USA) and the Bcl-2 inhibitor (also known as a BH3 mimetic drug), ABT-263 (AdooQ BioScience), were also used in this study.
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6

Establishing Prostate Cancer Cell Line Models

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C4-2, CWR22Rv1, and HEK293T cell lines were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA) and tested for mycoplasma contamination. C4-2 and CWR22Rv1 cells were cultured in RPMI 1640 media, and HEK293T cells were cultured in DMEM media. Both media contained 1% penicillin and streptomycin, as well as 10% fetal bovine serum (FBS). C4-2 EnzR cell lines (EnzR1-C4-2) were generated via chronic culture of CRPC C4-2 cells (EnzS1-C4-2) in media containing increasing Enz concentrations (from 10 µM to 40 µM) for 3 months at each concentration. CWR22Rv1 cells are naturally resistant to Enz and were named as Enz-R3-CWR22Rv1 for these studies. All cells were maintained in a humidified 5% CO2 environment at 37 °C. All cell lines were authenticated and detected to be mycoplasma and bacteria free following ATCC’s instructions. Enz was used at 10 μM for EnzR1-C4-2 cell culture. ABT263 (Adooq, # A10022, Irvine, CA, USA) was used at 5 μM for EnzS1-C4-2 and EnzR1-C4-2 cells, and at 10 μM for EnzR3-CWR22Rv1 cells. Cycloheximide (CHX) (Adooq, # A10036) was used at 1 μg/mL, MG132 at 10 μM (Adooq, # A11043), Bortezomib at 0.5 μM (Selleckchem, #S1013, Houston, TX, USA), N-acetyl-cysteine (NAC) (Adooq, # A10032) was used at 3 mM, and Z-VAD-FMK at 10 μM (Adooq, # A12373).
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7

Comprehensive Research Protocol Inventory

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AZ’1569 (compound-43), AZ’8037 (compound-25; ref. 11 (link)), AZD1480, and AZD6244 (Selumetinib/ARRY-142866) were obtained from AstraZeneca, 5-fluorouracil (5-FU) and oxaliplatin from the Belfast City Hospital Pharmacy, cetuximab from Merck Serono, and crizotinib from Pfizer. Ruloxitinib, capivasertib, ABT-737, and compound library were purchased from Selleckchem, S6K-18 and ABT-263 from Adooq Biosciences, and SN-38 from Abatra. See Supplementary Materials and Methods for references of non–FDA-approved drugs used. siRNA targeting BCL2L1 and the ON-TARGETplus siRNA library was obtained from Dharmacon. See Supplementary Materials and Methods for details of plasmids.
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8

Cytotoxicity Assay for Cancer Cells

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The following drugs used in this study were purchased: ABT‐263 (AdooQ BioScience, Irwin, CA, USA), LY294002 (Cayman Chemical Company, Ann Arbor, MI, USA), Ibrutinib and Idelalisib (Selleck Chemicals, Houston, TX, USA). 293T and SU‐DHL4 (a kind gift from Dr Kunihiko Takeyama, Dana Farber Cancer Institute, Boston, MA, USA) cells were cultured in DMEM (Sigma Aldrich, St Louis, MO, USA) and RPMI (Sigma Aldrich), respectively. Both culture media were supplemented with 10% FCS, 2 mM l‐glutamine, 100 U/mL penicillin, 100 μg/mL streptomycin and 1 mM sodium pyruvate.
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