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26 protocols using 80i light microscope

1

Fungal Wood Decay Collection and Identification

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Specimens of wood decay fungi were collected from various locations in Korea between 2012 and 2015. Specimens were dried and deposited in the Seoul National University Fungus Collection (SFC). The specimens were putatively identified based on fruiting body morphology and microscopic characteristics using Nikon 80i light microscope (Nikon, Tokyo, Japan) [11 12 18 30 ]. Dried tissue was rehydrated in 3% (w/v) KOH and stained in 1% (w/v) phloxine in order to measure key features, and drawings of these macromorphological and micromorphological features were generated. Our primary focus was the measurement of basidia (30 per sample) and basidiospores (10 per sample). "Q" in our results refers to the length/width ratio of an individual basidiospore; (n = x/y) means x measurement of basidiospores from y specimens.
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2

Formalin-Fixed Lung Histology

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The lung was fixed in 10% buffered formalin, embedded in paraffin, sectioned, and stained either with hematoxylin and eosin (H & E) or periodic acid–Schiff stained (PAS). Nikon 80i light microscope (Nikon Corporation, Tokyo, Japan) was used to take tissue sections imaged using.
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3

Histological Analysis of Tumor Sections

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The tumors were washed with ice-cold PBS and embedded in paraffin blocks. Tumors were then sectioned at a thickness of 4 µm and stained with hematoxylin and eosin (H&E). The sections were examined using a Nikon 80i light microscope (Nikon, Tokyo, Japan).
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4

Histological Analysis of Murine Corneas

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For the purpose of histological analysis, mice were sacrificed by cervical dislocation and eyeballs were dissected at 14d, 21d and 28d after modeling. After a fixation in 4% paraformaldehyde for 24 h, the tissues were dehydrated, dipped in wax, embedded, and sliced in sequence. The slices were under a routine operation of dewaxing and then HE staining was used for pathological examination. Photos were taken by Nikon 80i light microscope (Nikon, Sendai, Japan) and analyzed in terms of corneal thickness.
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5

Immunocytochemical Characterization of Neural Stem Cell Differentiation

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For the differentiation of NSCs, cells were plated on poly-d-lysine-coated cover slips in DMEM/F12 medium with 1% FBS ( Invitrogen, Carlsbad, CA, USA) instead of growth factors for 7 days. Cells were washed in PBS three times and fixed in 4% formaldehyde for 10 min. Triton X-100 (0.2%) was used for permeabilization for 10 min at room temperature. Then, the cells were blocked in 1% BSA (Solarbio, Beijing, China) in PBS for 20 min at room temperature. Next, the cells were incubated with primary antibodies (rabbit polyclonal anti-glial fibrillary acidic protein (GFAP) 1:1000, Abcam, Cambridge, MA, USA, and mouse monoclonal anti-neuronal class III β-Tubulin (Tuj1) 1:500, Abcam, Cambridge, MA, USA) overnight at 4 °C. After washing with PBS, the cells were incubated with secondary antibodies (Alexa Fluor 488-conjugated IgG 1:1000 and Alexa Fluor 594-conjugated IgG 1:1000, Invitrogen, Carlsbad, CA, USA) in PBS for 40 min at 37 °C. Images were captured using a Nikon 80i light microscope equipped with a CCD camera.
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6

Lipid Visualization in Heart Tissue

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Lipid distribution in heart tissues was examined by oil red O staining. Mouse samples were fixed with 10% formalin for 30 min in room temperature and sliced into 10-µm-thick sections with a cryostat. Next, the tissues were washed in PBS for 30 sec, washed in 60% isopropyl alcohol for 1 min, and stained by 0.5% oil red O for 10 min at 37°C. Thereafter, slices were fractionated with 60% iso-propyl alcohol for 2 min, washed with PBS solution for 2 min, and stained with 0.25% hematoxylin for 5 min in room temperature. Following a further 2 min wash in PBS, slices were colored with 0.1% lithium carbonate for 30 sec at room temperature, washed with PBS solution for 5 min and coverslipped (26 (link)). The slices were visualized using a Nikon 80i light microscope (Nikon Corporation, Tokyo, Japan) at magnification, ×20.
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7

Morphological Analysis of Amanita Specimens

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Eighty-nine specimens kept in the Seoul National University Fungus Collection (SFC) and the Korea University Culture Collection (KUC) were analyzed in this study. They were originally identified as seven species; 81 specimens from SFC comprised six species (A. albida, A. heteromorpha, A. malicola, A. serialis, A. sinuosa, and A. xantha) and eight specimens from KUC comprised four species (A. albida, A. heteromorpha, A. malicola, and A. sitchensis). Measurements and drawings were made from slide preparations mounted in 3% KOH and 1% phloxine [24 ] by using a Nikon 80i light microscope (Nikon, Tokyo, Japan). More than 20 basidiospores were measured to ascertain average dimensions. The quotient (Q) is the ratio of variation between the mean spore length and the mean spore width of the studied specimens. Species identification via classical methodology was achieved by macro- and micro-morphological observations using taxonomic guides [1 , 25 , 26 ].
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8

Histological Staining of Intestinal Organoids

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For histological staining, intestinal organoids were fixed with the same protocol as used for immunohistochemistry, sliced in 4 µm thick sections and rehydrated in PB three times for 5 min each. For hematoxylin-eosin (HE) staining the slides were stained in Mayer’s hemalum for 7 min, followed by rinsing in running tap water for further 7 min and staining with 0.1% (v/v) eosin [addition of 0.01% (v/v) glacial acetic acid] for 5 min. For Periodic Acid Schiff (PAS) staining, the rehydrated slides were transferred into 1% (w/v) periodic acid solution for 10 min, followed by rinsing in tap water for 10 min and in distilled water for 2 min twice. Further staining with Schiff’s reagent for 15 min was followed by washing in 35°C warm tap water before the slides were stained with Mayer’s hemalum for 5 min and rinsed in running tap water for 10 min. After HE and PAS staining, the slides were transferred into staining dishes with increasing ethanol concentrations [70% < 80% < 96%, (v/v)] for a few seconds each. Finally, the slides were treated with Roti-Histol for 3 min twice and mounted with Roti-Histokit. All staining reagents were obtained from Carl Roth GmbH, Karlsruhe, Germany. Pictures were taken with the Nikon 80i light microscope.
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9

Histological Analysis of Liver and Kidney

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Liver and kidney tissues were fixed in 10% neutral formalin solution for 24 h, dehydrated in ascending series of ethanol, cleared in xylene then embedded in paraffin wax. Sections were stained with conventional haematoxylin and eosin (H&E) dye and examined using a Nikon 80i light microscope (Nikon Corporation, Tokyo, Japan).
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10

Arthrospira Cultivation under Cold Conditions

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Arthrospira, O9.13F and four strains PCC 8005, PCC 7345, SAG 49.88 and CCALA 023 were cultivated without shaking under cold room conditions in the Zarrouk medium under a constant lighting of 10 µmol photons m−2 s−1 with a daily amplitude of 5–8 °C for 10 months. After 3 and 10 months of cultivation in the cold room, all samples were inoculated onto the solid Zarrouk medium and grown at 20 °C under a light intensity of 20 µmol photons m−2 s−1 for two months. The photographic documentation was made using a Nikon 80i light microscope.
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