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98 protocols using ab179463

1

Protein Extraction and Western Blot Analysis

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Protein samples from femoral head tissues were obtained using a Total Protein Extraction Kit (BC3711, Solarbio). Then, the protein concentration was determined by a Protein Assay kit (Beyotime, Shanghai, China). Protein samples were separated by 10% SDS-PAGE gel and electrically transferred to PVDF membranes (Millipore, Billerica, MA, USA). The membranes were hatched with the primary antibodies at 4℃ overnight after being blocked with 3% bovine serum albumin (BSA, Sangon Biotech, Shanghai, China) for 1 h at room temperature. The primary antibodies were listed as followed: rabbit anti-AKT (ab179463, 1:10,000); rabbit anti-p-AKT (ab81283, 1:1,000); rabbit anti-mTOR (ab2732; 1:10,000); rabbit anti-p-mTOR (ab63552; 1:1,000); rabbit anti-β-actin (ab8227; 1:1,000) (Abcam, Cambridge, UK). The membranes were incubated with goat-anti-rabbit IgG (H+L)-HRP (1:10,000, ab6721, Abcam) for 1 h at room temperature after washing with TBST thrice. Protein bands were visualized with an Electrochemilluminescence (ECL) chemilumine-scence kit (WBULS0500; EMD Millipore) and the bands intensity were analyzed with Image-Pro Plus 6.0 software.
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2

Protein Expression Analysis by Western Blotting

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Western blotting was used to test the expression of GOLPH3, Foxo1, p-Foxo1, AKT, p-AKT,
p27, and CyclinD1. β-Actin was used as a control. Briefly, samples were extracted, loaded
on sodium dodecyl sulfate polyacrylamide gel electrophoresis, and transferred to
polyvinylidene difluoride membranes. Then, samples were incubated with primary antibodies
(all purchased from Abcam, Cambridge, Massachusetts) of anti-GOLPH3 antibody (ab91492,
1/500), anti-Foxo1 antibody (ab70382, 1/3000), anti-p-Foxo1 antibody (ab131339, 1/1000),
anti-AKT antibody (ab8805, 1/500), anti-p-AKT antibody (ab8933, 1/500), anti-p27 antibody
(ab193379, 1/500), anti-CyclinD1 antibody (ab16663, 1/200), anti-AKT antibody (ab179463,
1/10 000), and anti-p-AKT antibody (ab38449, 1/500), following with a conjugated secondary
antibody (the corresponding secondary horseradish peroxidase-conjugated anti-rabbit
[ab6721] or anti-mouse [ab6785] immunoglobulin G antibodies). The Pierce ECL Western
Blotting Substrate (Pierce, Shanghai, China) was used to scan the protein bands, according
to the manufacture’s instruction.
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3

Protein Expression Analysis via Western Blot

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Total protein was isolated using RIPA lysis buffer (Beyotime). Equivalent amounts of proteins were fractionated by SDS-PAGE gel and then transferred onto PVDF membranes (Millipore, Billerica, MA, USA). The membranes were then incubated with specific primary antibodies against AKT (ab179463; 1:10,000; Abcam, Inc.), p-AKT (Ser473, #4060; 1:2000; Cell Signaling Technology, Inc.), mTOR (2972; 1:1000; Cell Signaling Technology, Inc.), p-mTOR (phospho S2448; ab109268; 1:2000; Abcam, Inc.), GAPDH (#5174; 1:1000; Cell Signaling Technology, Inc.) overnight at 4°C, followed by incubation with HRP-conjugated secondary antibody (1:10,000; Santa Cruz Biotechnology, Inc.) at room temperature for 1 hr. The immunoreactive bands were detected using the enhanced chemiluminescence detection kit (Millipore). GAPDH was used as the control.
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4

Elucidating Mesangial Cell Pathways

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A human mesangial cell line (HMC cell line, FH0241) was obtained from FuHeng Biology Co. (Shanghai, China). DHT (116064-77-8, purity ≥ 98%) was acquired from Krre Technology Co. (Beijing, China). Mannitol (69-65-8) was obtained from Macklin Biochemical Co. (Shanghai, China). The following antibodies: GAPDH (1:1000, ab8245), α-smooth muscle actin (1:1000, ab7817), Collagen I (1:1000, ab260043), Fibronectin (1:1000, ab2413), PI3KCA (1:1000, ab40776), PI3K (1:1000, ab191606), p-PI3K (1:1000, ab182651), AKT (1:1000, ab179463), and p-AKT (1:1000, ab192623) were bought from Abcam Co. (Cambridge, United Kingdom). Goat Anti-Rabbit IgG H&L (HRP, A0208), Rabbit Anti-Mouse IgG H&L (HRP, A0216), and Rabbit Anti-Mouse IgG H&L (Alexa Fluor 488, A0428) were purchased from Beyotime (Shanghai, China). DAPI Staining Solution (C1006) and Cell Counting Kit-8 (C0038) were also obtained from Beyotime (Shanghai, China). Glucose, Trypsin, Dulbecco’s Modified Eagle’s Medium (DMEM), and fetal bovine serum (FBS) were purchased from GIBCO. The Mouse Albumin ELISA Kit (ab207620) was purchased from Abcam.
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5

Quantitative Protein Analysis in Cells

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The total proteins were extracted from cells using RIPA buffer (Auragene). The protein concentration was determined using Detergent Compatible Bradford Protein Assay Kit (Beyotime Institute of Biotechnology). Proteins (20-30 µg) were resolved using 10% PAGE (Bio-Rad Laboratories, Inc.), transferred to a nitrocellulose membrane (Pall Life Sciences) at 25 V for 30 min, and blocked for 1 h in 10% non-fat milk in 1x Tris-buffered saline/0.1% (v/v) Tween 20 at room temperature. The membranes were incubated at 4˚C overnight with the following primary antibodies: Collagen I (1:1,000, ab138492, Abcam), α-SMA (1:1,000, ab7817, Abcam), fibronectin (FN; 1:1,000, ab2413, Abcam), S1PR1 (1:1,000, 55133-1-AP, Proteintech), p-PI3K (1:1,000, ab191606, Abcam), PI3K (1:1,000, ab182651, Abcam), p-AKT (1:1,000, ab192623, Abcam), AKT (1:1,000, ab179463, Abcam), and GAPDH (1:2,500, ab9485, Abcam). Next, the membranes were washed with PBST four times and then incubated with the HRP-conjugated goat anti-rabbit or mouse secondary antibodies (cat. nos. sc-2004 or sc-2005; 1:5,000; Santa Cruz Biotechnology) for 1 h at room temperature. Finally, the protein bands were visualized using an ECL detection system (Beyotime Institute of Biotechnology) and quantified using ImageJ software 1.49 (National Institutes of Health).
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6

Protein Expression Analysis in NSCLC

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To prepare the protein samples for loading, transfected H1975 and A549 cells or tumor tissues were lysed using a radio-immunoprecipitation assay. After quantification, 40 µg of protein samples were subjected to separation through sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore). After blocking in non-fat milk, the membranes were incubated in Tris Buffered Saline Tween (TBST) containing primary antibody against Ki-67 (ab92742; Abcam), matrix metalloproteinase 9 (MMP-9; ab38898; Abcam), HK2 (ab209847; Abcam), phosphorylated protein kinase B (p-AKT; ab192623; Abcam), AKT (ab179463; Abcam), p-mammalian target of rapamycin (p-mTOR; ab109268; Abcam), mTOR (ab32028; Abcam), or GAPDH (ab181602; Abcam) and then incubated with secondary antibody (ab205718; Abcam). The blots were visualized using a chemiluminescence kit (Merck Millipore, Darmstadt, Germany). GAPDH served as a control.
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7

Western Blot Analysis of PI3K/Akt/mTOR Pathway

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Following the treatment described previously, proteins in the HepG2 cells were isolated through treatment with RIPA buffer (Meilunbio, China) with phosphatase inhibitor cocktail I (Meilunbio, China) on ice. The proteins were separated by SDS–PAGE and transferred to nitrocellulose membranes (Millipore, Billerica, United States). After blocking, the membranes were incubated overnight with antibodies at 4°C and then with horseradish peroxidase (HRP)-conjugated anti-rabbit and anti-mouse secondary antibodies. Antibodies against PI3K (ab191606), phosphorylated (p)-PI3K (ab182651), Akt (ab179463) and p-Akt (ab192623) antibodies were purchased from Abcam; antibodies against mTOR (66888-1-Ig), p-mTOR (67778-1-Ig), Bcl-2 (12789-1-AP), Caspase-9 (10380-1-AP), Bax (50599-2-Ig), and β-actin (66009-1-Ig), and the secondary antibodies for mouse (SA00001-1) and rabbit (SA00001-2) were purchased from Proteintech. Finally, the blots were visualized with a ChampChemi detection system (Sage Creation, China).
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8

Immunoblot Analysis of Signaling Proteins

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The cultured cells were taken for immunoblot analysis. After lysis and centrifugation, the sample supernatant was quantified by BCA protein analysis kit. Then, protein samples were separated by 10% polyacrylamide gel electrophoresis. Protein was transferred to polyvinylidene fluoride membrane and blocked with 5% skim milk to prevent nonspecific binding and then incubated overnight with appropriate antibodies and primary antibodies of internal reference at 4°C. After culture, the cell membrane was washed with TBST and then cultured with appropriate secondary antibody labeled with peroxidase. Compared with β-actin expression, all protein blots expressed average area density. Antibodies were sourced from Abcam, specific product information is anti-EGFR (ab52894), anti-EGFR (phosphoY1068, ab40815), anti-JAK1 (ab133666), anti-JAK1 (phosphoY1022 + Y1023, ab13805), anti-STAT3 (ab68153), anti-STAT3 (phosphoY705, ab76315), anti-PI3K (ab191606), anti-PI3K (phosphoY607, ab182651), anti-AKT1 (ab179463), and anti-AKT1 (phosphoS473, ab81283).
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9

Protein Expression Analysis in PC Cells

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The PC cell lines were dissociated on ice for 30 min after supplementation of lysis buffer. After centrifugation at the speed of 12,000 rpm at 4°C, cell supernatants were collected for quantitation of protein levels. Total proteins (30 µg for each sample) were separated after undergoing sodium dodecyl sulfate (SDS-PAGE; BIO-RAD, USA), and the resultant samples were then transferred onto the polyvinylidene fluoride membrane. With 5% skimmed milk applied to block protein samples for 2 h, primary antibodies (Abcam, USA) against β-actin (rabbit anti-human, 1:1,000, ab8226), PI3K (rabbit anti-human, 1:1,000, ab191606), p-PI3K (rabbit anti-human, 1:1,000, ab182651), Akt (rabbit anti-human, 1:10,000, ab179463), p-Akt (rabbit anti-human, 1:500, ab38449), mTOR (rabbit anti-human, 1:10,000, ab134903) and p-mTOR (rabbit anti-human, 1:1,000, ab109268) were diluted to incubate the proteins at 4°C for overnight. After that the samples were rinsed with TBST which was inclusive of Tween 20, and then secondary antibodies labeled by horseradish peroxidase (1:5,000, Abcam, USA) were utilized to incubate protein samples for 2 h. Then the samples were monitored with electro-chemiluminescence in the darkness, and gray values of protein bands were analyzed utilizing ImageJ software.
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10

Protein Analysis of Cellular Pathways

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High-glucose Dulbecco's modified Eagle's medium (H-DMEM) was obtained from Basalmedia Technologies (Shanghai, China) and fetal bovine serum (FBS) was obtained from Bailing Biotechnology (Lanzhou, China). TurboFect™ transfection reagent (R0531) and Pierce™ Protein G Magnetic Beads were from Thermo Fisher Scientific (Waltham, NY, USA). Cholesterol was obtained from Sigma-Aldrich (St. Louis, MO, USA). The primary antibodies, rabbit monoclonal anti-AKT1 (ab81283), anti-AKT-1/2/3 (ab179463), anti-mTOR/p-mTOR (ab32028, ab109268), anti-HO-1 (ab52947), anti-Aconitase2 (Aco2) (ab129069), anti-lactate dehydrogenase (LDH) (ab134187), anti-pyruvate dehydrogenase E-1β (PDHE-1β) (ab155996), anti-nuclear factor erythroid 2-like 2 (Nrf2) (ab62352) and anti-EBP (ab135745) were purchased from Abcam (Cambridge, MA, USA). Anti-histone H3.1 was obtained from Abmart. Anti-malic dehydrogenase (MDH2) (#8610) was obtained from Cell Signaling Technology. The anti-rabbit HRP-labeling and the anti-rabbit DyLight™ 488- and anti-mouse DyLight™ 633-labeled secondary antibodies were from KPL.
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