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16 protocols using cd107a apc

1

Evaluating NK and γδT Cell Degranulation

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To evaluate NK and γδT cell degranulation, 1 × 106 PBMCs were mixed with 2 × 105 target cells (K562 cells) in 400 μL RPMI/10% FBS and seeded in 96-well plates for 4 h at 37 °C. Thereafter, the cells were stained with CD3-PerCP (clone: HIT3a, BioLegend), TCR γδ-BV421 (clone: B1, BioLegend), CD56-PE (clone: MY31, BD Biosciences), and CD107a APC (clone: H4A3, BD Biosciences) for 30 min. CD107a positivity was measured on a FACSCanto II flow cytometer.
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2

CD107a Translocation Assay for NK and γδ T Cell Degranulation

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A CD107a translocation assay was used to evaluate the degranulation activity of the fresh and induced NK and γδ T cells as previously described [37 (link)]. Purified induced NK and γδ T cells from patients with MM were incubated with 0, 10, and 20 nM bortezomib for 12 h. The drug-treated cells were mixed with RPMI-8226 cells at a ratio of 10:1 and incubated at 37°C in 5% CO2. After 4 h of incubation, the cells were collected and stained with CD56-FITC or Vγ9-FITC, CD3-PerCp, and CD107a-APC (BD Biosciences). After staining, the cells were analyzed using a BD FACSCalibur flow cytometer (BD Biosciences).
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3

Comprehensive Immune Cell Profiling

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CD3+ T, CD4+ T, CD8+ T, CD19+ B, and CD16+ CD56+ NK cells were stained using BD Multitest 6-color TBNK reagent in Trucount tubes. All anti-human antibodies were purchased from BD Biosciences: CD45-APC-Cy™7 (#557833), CD3-APC (#555342), CD4-FITC (#566802), CD8-Percp-cy5.5 (#565310), CD14-AF488 (#562689), CD16-PE (#561313), CD107a-APC (#560664), CD45RA-BV605 (#562886), CD62L-PE (#555544), CD197-BV421 (#566743). Total cells were Fc-blocked and stained with indicated combinations of antibodies for 30 min on ice, then washed three times and resuspended in 1% FBS/PBS. The flow cytometric data were collected on a BD Calibur flow cytometer and analyzed using FlowJo software or Summit software.
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4

Cytotoxicity Assay for Multiple Myeloma

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As the source of effector cells, we used both PBMCs and BM samples derived from MM patients at different state disease and PBMCs from healthy donors. K562 were used as target cells that were co-incubated with effector cells in complete medium at 2.5:1 effector/target (E/T) ratio for 2 h at 37 °C and 5% CO2 [11 (link)]. In some experiments, different human cell lines such as SKO-007(J3), ARK and ARP and primary malignant plasma cells were used as targets. Thereafter, cells were washed with PBS/2% FCS and stained with the lysosomal marker CD107a/APC (BD Biosciences, San Jose, CA) and anti-CD3/APC-H7, anti-CD56/PE, anti-CD45/PE-Cy7, anti-CD16/PerCP for 45 min at 4 °C. All the samples were acquired using a FACSCanto II (BD Biosciences, San Jose, CA) and data analysis was performed using the FlowJo 9.3.2 program (TreeStar, Ashland, OR, USA).
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5

Flow Cytometric Analysis of BMSC Markers

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Cell surface markers were measured on 50%, 80% and 100% confluent BMSCs by Flow Cytometry assay; the markers were selected according to either global gene expression profiling results or from the literature34 (link)–36 (link). The following antibodies were used, PODXL-FITC (MBL International Inc, Nagoya, Japan), CD49f-PE, CD54-APC, TLR1-PE, CD106-PE, LAMP1 (CD107a)-APC, CD146-PE, CCR7-PE, CD55-FITC, TLR4-PE (BD Biosciences), CD200-APC, CD10-APC (Biolegend, San Diego, CA, USA), and FZD4-APC (R&D, Minneapolis, MN, USA), isotype controls were IgG1-FITC, IgG1-PE, IgG2a-FITC (BD Bioscience), IgG1-APC (eBioscience, San Diego, CA, USA). In brief, BMSCs were incubated with antibody cocktail for 30 minutes in the dark at room temperature and washed with PBS containing 1% BSA; the cells were then suspended in 0.3 mL PBS with 1% BSA, counterstained with 7-AAD; twenty-thousand events were acquired on an Accuri C6 flow cytometer. The data were analyzed with FlowJo software (TreeStar, Ashland, OR). Positive cells were identified as those whose intensities were greater than 99 percentile of the isotype control.
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6

Evaluating mSA2 CAR T Cell Activation

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The indicated target
cells were stained with Cell Trace Yellow following the manufacturer’s
recommended protocol (ThermoFisher). Cells were then stained with
the indicated antibody adaptors/amounts and were washed twice with
flow cytometry buffer and resuspended in cell culture media. 10,000
target cells per well were then cocultured with 50,000 mSA2 CAR T
cells (effector/target = 5:1) in a 96-well V-bottom plate. All coincubation
experiments with mSA2 CAR T cells were performed in DMEM media supplemented
with 10% FBS. For UV-cleaving experiments, wells were then exposed
to 365 nm light using a 365 nm LED (Mouser, 416-LST101G01UV01). For
small-molecule cleavage experiments, the indicated amounts of 2DPBM
were added to wells containing all cell populations. Cells were then
incubated at 37 °C for 24 h. Cells were then evaluated and stained
with fluorescently labeled antibodies recognizing T cell activation
markers: CD69-BV711 (BD Biosciences) and CD107a-APC (BD Biosciences)
and GFP were used for NFAT-induction experiments. Marker expression
was specifically evaluated on mSA2 CAR+ by gating the TagBFP+ population.
Supernatants from primary cell assays were also collected and analyzed
for IFNγ by ELISA (BioLegend).
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7

Tumor Dissociation and Flow Cytometry Analysis

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Tumors were minced into small (1–2 mm3) pieces, and digested using a Tumor Dissociation Kit (Miltenyi Biotec) according to the manufacturer’s instructions. The resulting supernatant was filtered through a 200-mesh sieve and washed twice with ice-cold PBS12 . healthy donors were incubated for 5 min with Fc-block (BD Biosciences). The phenotype of MDSCs in patients was determined by a combination of surface markers including HLADR-PerCP-Cy5.5 (Clone L243, BD Biosciences), CD33-FITC (Clone P67.6, BD Biosciences), CD11b-APC (Clone CBRM1/5, BD Biosciences), and CD45-BV421 (Clone HI30, BD Biosciences). Afterward, PD-L1 membrane expression was evaluated using PD-L1 (CD274)-PE (Clone 29E.2A3, BD Biosciences).
For the mouse model, single-cell suspensions were stained with either a myeloid panel of antibodies comprising CD45-FITC (Clone 30-F11, BD Biosciences), CD11b-APC-Cy7 (Clone M1/70, BD Biosciences), Gr-1-PE (Clone RB6-8C5, BD Biosciences), and PD-L1-APC (Clone 10F.9G2, BD Biosciences) or a lymphoid panel of antibodies comprising CD45-FITC (Clone 30-F11, BD Biosciences), CD4-PerCP/Cy5.5 (Clone RM4-5, BD Biosciences), CD8-PE (Clone 53–6.7, BD Biosciences), CD62L-APC (Clone MEL-14, BD Biosciences), and CD107a-APC (Clone 1D4B, BD Biosciences). Flow cytometry was performed with a BD FACS Canto II flow cytometer. Data were analyzed using FlowJo software (TreeStar, Inc, Ashland, OR).
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8

Quantifying mSA2 CAR T Cell Activation

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The indicated target cells were stained with Cell Trace Yellow following the manufacturer’s recommended protocol (ThermoFisher). Cells were then stained with the indicated antibody adaptors/amounts and were washed twice with flow cytometry buffer and resuspended in cell culture media. 10,000 target cells per well were then co-cultured with 50,000 mSA2 CAR T cells (effector:target=5:1) in a 96 well V-bottom plate. All co-incubation experiments with mSA2 CAR T cells were performed in DMEM media supplemented with 10% FBS. For UV-cleaving experiments, wells were then exposed to 365 nm light using a 365 nm LED (Mouser, 416-LST101G01UV01). For small molecule cleaving experiments, the indicated amounts of 2DPBM were added to wells containing all cell populations. Cells were then incubated at 37°C for 24 hours. Cells were then evaluated stained with fluorescently labeled antibodies recognizing T cell activation markers: CD69-BV711 (BD Biosciences) and CD107a-APC (BD Biosciences) and GFP for NFAT-induction experiments. Marker expression was specifically evaluated on mSA2 CAR+ by gating for the TagBFP+ population. Supernatants from primary cell assays were also collected and analyzed for IFNɣ by ELISA (BioLegend).
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9

Single-Cell Immunophenotyping of NK Cells

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Cells were prepared in a single-cell suspension and washed with phosphate-buffered saline. After incubation with FcR Blocking Reagent (miltenyi, 130-059-901) for 10 min, NK cells were stained with fluorescence antibodies for 30 min at 4°C. The following antibodies were used in this research (all antibodies from BioLegend unless otherwise indicated): FITC-conjugated antibody to human CD3 (300306), CD56-PE (304606), CD107a-APC (328620), PD-1-APC (BD Pharmingen, 558694), Perforin-APC (353311), IFN-γ-APC (502512), CFSE, and PI (BD Pharmingen). GCMSCs were assessed for membrane expression of selected markers by using CD19-FITC, CD29-PE, CD34-FITC, CD45-FITC, CD90-PE, and CD105-PE antibodies (all antibodies above from eBioscience). For intracellular cytokine staining, NK cells were stimulated for 5 h with a 2 μl/ml cell stimulation cocktail (plus protein transport inhibitors) (eBioscience) containing phorbol 12-myristate 13-acetate, ionomycin, brefeldin A, and monensin. Then, cells were stained for surface markers, fixed, and permeabilised with eBioscience FoxP3 fixation buffer according to the manufacturer's instructions. The fixed cells were then stained with perforin, CD107a, and IFN-γ.
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10

NK Cell Phenotyping and Inhibition

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ICAM2‐PE, nectin‐2‐PE, MICA/B‐PE HLA‐A, B, C‐PE CD3‐BV510, CD56‐BV421, and CD107a‐APC antibodies were purchased from BD Biosciences. CEACAM1‐PE, ULBP1‐APC, ULBP2/5/6‐PE, and ULBP3‐APC antibodies were purchased from R&D Systems. The 7‐AAD Viability Staining Solution, PVR‐PE, HLA‐E‐PE, and HLA‐G‐PE were purchased from BioLegend (San Diego, CA). The BAT3 antibody was purchased from Abcam (Cambridge, UK). The ICAM1‐PE antibody was purchased from Becton Dickinson Immunocytometry Systems (San Jose, CA). We purchased the NK Cell Isolation Kit from Miltenyi Biotec (California), the Vybrant CFDA SE Cell Tracer Kit from Life Technologies (Ontario, Canada), and the HCV nonstructural protein 3/4A protease inhibitor BILN2061 (BILN) from Acme Bioscience (Belmont, CA).19
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