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62 protocols using biostation ct

1

High-Throughput Live-Cell Imaging of Motor Neurons

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Dissociated MNs were plated in complete MN media at a density of 50, 25, and 12.5 K cells/well in the inner 60 wells of borate/poly-ornithine/laminin/fibronectin coated 96-well plates (Greiner). Outer wells were filled with water to avoid evaporation effects. A total of 3 days after plating, 3/4 of the media was removed and replaced with fresh complete MN media. A total of 6 days after plating, and before treatment, the MN culture plate was entered into the Nikon BioStation CT for an initial image acquisition. A 10x objective was used to acquire phase images across the plate with a 4 × 4 stitched tiling capture area equivalent to 3.08 mm × 3.08 mm per well. After an initial image acquisition, the plate was removed, and MN culture media was replaced with stressor media as indicated in ER stressor assays methods section. The plate was then returned to the Nikon BioStation CT for image acquisition every 6 h for 48 h. Final images were then saved as time-lapse video files using CL-Quant software (Nikon) and FIJI/ImageJ was used to select and crop a region of interest for representative video files.
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2

Time-lapse Imaging of Mesenchymal Stem Cells

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Phase-contrast microscopic images of MSCs were obtained in 6-well plates using the BioStation CT (Nikon Corporation, Tokyo, Japan) as described previously with some modifications [22] . Each condition was evaluated in three wells. For all conditions, images were acquired at 4× magnification (8 × 8 tiling per well, covering 16 mm2, 1000 pixels2/image). Time intervals were set to 6 h, which started at 12 h after seeding. Time points were designated as Time 1 (0.5 days/12 h after seeding) to Time 22 (5.5 days/132 h after seeding). For Conditions C and D, several wells contained non-cellular objects as noise in the image which were eliminated manually.
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3

Quantifying Cell Migration and Wound Healing

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For the wound healing assay, 250,000 Hela cells were plated in each well of 24-well plates. The next day, a single wound was introduced to each well using a 20 µl filter tip scratch; the wells were then washed with PBS to remove detached cells and given 1 ml of fresh medium. The wounds were monitored in an automated incubation microscope BioStation CT (Nikon) in 1-hour intervals for 24 h. Wound widths were measured in ImageJ (https://imagej.nih.gov/ij/) using three measurements per image that were averaged to obtain a single value for each time point. Only wounds with initial widths of 700–900 µm were included in each analysis.
For the cell tracking migration assay, 4000 Hela cells were plated in 24-well plates. Starting the next day, the cells were monitored in an automated incubation microscope BioStation CT in 5–10-minute intervals for 24 h. The trajectories were manually tracked using the ImageJ Manual Tracking plugin (https://imagej.nih.gov/ij/plugins/track/track.html), with the beginning and end of the measurement represented by two cell divisions. The length of the cell trajectories and the spatial (euclidean) distance between their beginnings and ends were analyzed using the Chemotaxis and Migration Tool 2.0 (ibidi).
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4

Differentiation of hESCs into Ventral Neural Lineages

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hESC (line H9, WiCell) was expanded and differentiated as previously described 21; however, EBs were not transferred to attachment culture conditions as done previously, but were maintained in 3D culture throughout differentiation using bacteriological dishes and low attachment six‐well plates (Corning, New York, USA). For IGF‐1 treatment, cultures were differentiated in ventral neural induction media (VNIM) media 21 supplemented with recombinant human IGF‐1 (5 ng/ml, Sigma‐Aldrich, San Louis, USA) until day 37, then in basal knockout serum‐free media 14 with 10 ng/ml IGF‐1 until day 90 (Fig. 1Aii). Control cultures were differentiated in parallel in the absence of IGF‐1 (Fig. 1Ai). Time‐lapse capture of culture morphology was achieved using a BioStation CT (Nikon Corporation, Tokyo, Japan).
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5

Menthol Effects on BEAS-2B Cell Growth

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BEAS-2B cells in 24-well plates (8,000 cells/well) were incubated at 37°C for 24 h. Cells were treated with 0.02 or 0.2 mg/mL of menthol solution or menthol aerosol fluid and incubated in a Nikon BioStation CT (Nikon, Melville, New York). Time-lapse images were captured every 2 h for 48 h. One set of cells was plated for 24 h (attached) before treatment, while the other set (attaching) was plated simultaneously with treatment. Menthol concentrations were chosen that did not produce an effect in the MTT assay. Data were collected from five different fields in each well. Images were segmented and analyzed using CL Quant software (DR Vision) to determine the rate of growth and morphology of the control and treated cells. Cells were also treated with 0.4% trypan blue to determine the percentage of dead cells.
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6

Cell Attachment Dynamics on ECM Proteins

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Cells were plated at approximately 25% confluence on collagen IV or fibronectin coated (24) well plates. Time lapse microscopy was performed using a BioStation CT (Nikon) and the change in cell number after 48 hours was determined by manually counting cells per vision field. Numerical data presented is the average of at least three biological replicates +/- the standard deviation. Statistical analysis of attachment was performed using the Student's t-test method. Statistical significance was determined if the two-sided p value of the test was < 0.05.
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7

Time-Lapse Monitoring of HeLa Spheroid Growth

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The human cervical cancer cell line HeLa was obtained from Dr. Masao Kawakita at The Tokyo Metropolitan Institute of Medical Science (Rinshoken) (Tokyo, Japan) [20 (link)] on October 7, 2009. The cells were grown in soft agar in accordance with an assay protocol, a detailed description of which is shown in S1 Table. HeLa cells in 0.35% agarose medium were seeded on a solid layer of 0.7% agarose medium in a 6-well culture plate and incubated for 1 day. Seeding density was kept sufficiently low (500 cells/well) to prevent spheroids from touching each other to analyze the individual growth process of each spheroid via time-lapse imaging of its growth. After 5 mL/well of the growth medium was added, the cells were incubated for 14 days from day 2–15 in a BioStation CT (Nikon, Tokyo, Japan) composed of a transport unit for plate transportation within the incubation area and an observation unit for automated imaging. During this period, the transport unit individually conveys the plates from the storage rack to the observation stage in accordance with configured schedules. Spheroid images were captured automatically in each well at 3 h intervals with a phase-contrast microscope at 10× magnification at each time point. Fig 2 shows an example of time-lapse spheroid growth.
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8

Mesenchymal Stem Cell Proliferation Assay

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Regarding the image acquisition, MSCs were seeded to 6-well plates (Corning Incorporated, NY, USA) at 2000 cells/cm2 (N = 3 wells per each lot) and cultured for 6 days before performing the T-cell proliferation inhibitory potency measurement. Phase-contrast microscopic images of cells were acquired using a BioStation CT (Nikon Corporation) employing a previously reported method of mesenchymal stem cell image acquisition, and tiled images (8 × 8 tiling covering 16 mm2, 1000 × 1000 pixels2/well) were acquired at 4× magnification. Time intervals were set to 6 h, which began at 12 h following seeding till 138 h. In addition, images containing high noise of debris were eliminated manually.
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9

Measuring Pancreatic Cancer Cell Migration

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Cell migrating ability of IGF-1R silenced pancreatic cancer cells were measured using the scratch assay. Briefly, cells were seeded in 6-well plates at a density of 3.5×105 cells/well for IGF-1R transfection. At this density, PANC-1 and HPAC cells reached monolayer confluency after 48×h. A straight wound or scratch was then gently created in the cell monolayers with a sterile pipette tip. Cells detached by the scratch were washed twice with PBS and cultures were then supplemented with fresh medium and monitored for 96 h at 37°C using the Biostation CT (Nikon Instruments Inc. Melville, NY, USA) for continuous observation. The Biostation was automatically programmed to capture photographs at 2 h intervals up to 96 h. Migration images were captured and documented at different time points using NIS-Element AR software.
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10

Scratch Assay for Pancreatic Cancer Cell Migration

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Cell migration was evaluated using scratch assay as described in our previous study [41 (link)]. HPAC and MIAPaCa-2 cells were seeded on a 6 well plate at a density of 8 × 105 cells/well and 6 × 105 cells/well for PANC-1. Cells were cultured at 37°C in 5% CO2 until monolayer confluency was reached. A scratch was made with a sterile pipette tip and washed twice with PBS and fresh media was added. Cells were treated with 15μM gedunin or vehicle (Dimethyl Sulfoxide).
HPAC cells were further studied using 1μg/ml of rhShh, 15μM gedunin, 5μM GANT-61, and combinations such as 15μM gedunin with 1μg/ml rhShh and 5μM GANT-61 with 1μg/ml rhShh in order to understand the involvement of sonic hedgehog signaling in pancreatic cancer cell migration. Images were taken at 2h intervals for a time period of 72h at 37°C using the Biostation CT (Nikon Instruments Inc. Melville, NY, USA). The distance migrated by the cells was calculated using NIS-Element AR software (24809702).
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