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21 protocols using mira3 fesem

1

Characterization of Nanoparticle Synthesis

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Material requirements were met by purchasing materials from Aldrich (China) and Merck (Germany) companies without any further purification. Thin-layer chromatography was used to monitor the reaction. Using silica-gel 60 F-254 as a matrix, TLC was conducted on glass plates. A Nicolet FT-IR 100 spectrometer was used to obtain infrared (IR) spectra. A Philips X-pert 1710 was used at room temperature to obtain X-ray diffraction (XRD) data. In addition, an energy-dispersive X-ray (EDAX) analysis of the nanoparticles was performed using a TESCAN MIRA III FE-SEM to determine their size and morphology. A Philips EM 208S at 120 kV was used to perform transmission electron microscopy (TEM). In the range of 25–800 °C, a thermal gravimetric analyzer was used to perform thermogravimetric analysis (TGA).
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2

Analytical Characterization of Amine-CQDs

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The fluorescence measurements were carried out by FL-Ar-2015 fluorescence spectrometer (teifsanje, Iran) and Cary Eclipse fluorescence spectrophotometer (Agilent, USA) with a 1.0 cm quartz cuvette. The Absorption measurements were performed through a T80 plus spectrophotometer (PG Instruments, Australia(. Transmission electron microscopy (TEM) images were obtained to analyze amine-CQDs morphology using a Philips-EM 208 s microscope (FEI Co., USA) at an accelerating voltage of 100 kv. Fourier transform infrared (FT-IR) spectra were acquired through Avatar (Thermo, USA), and ASCII (Perkin Elmer, UK) in the range of 400–4000 cm−1 by using KBr pellets. Zeta potential analysis was accomplished using an SZ100 (Horiba, Japan). EDS analysis of amine-CQDs was performed by a MIRA III FE-SEM (Tescan, Czech Republic(. The pHs value was measured and adjusted on a 691 pH meter (Metrohm Co., Swiss). Mixing the solutions was performed on a VORTEX Genius 3 (IKA, Germany).
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3

Synthesis and Characterization of Nanoparticles

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All required materials were purchased from Aldrich and Merck companies and were used without any further purification. The reaction was monitored by thin-layer chromatography. TLC was performed on glass plates incorporated with silica-gel 60 F-254. Infrared spectrums (IR) were determined by grade KBr on a Nicolet FT-IR 100 spectrometer. X-ray diffraction (XRD) data were obtained at room temperature by a Philips X-pert 1710. The size and morphology of the nanoparticles were determined by scanning electron microscopy (SEM) using a TESCAN MIRA III FE-SEM. Also, the elemental composition of the nanoparticles was studied by energy-dispersive X-ray (EDAX). Transmission electron microscopy (TEM) was performed using a Philips CM 120 at 120 kV. Thermal gravimetric analysis (TGA) was performed by a thermal analyzer with a heating rate of 10 °C min−1 in the range of 25–800 °C under the following air.
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4

Scanning Electron Microscopy of Cells

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All samples were fixed for 24 h with 4% paraformaldehyde and 1% glutaraldehyde in PBS, post-fixed for 45 min with 1% osmium tetraoxide in dH2O, washed and subsequently dehydrated stepwise in ethanol of 25%, 50%, 70%, 95%, 100%, 100% before drying in a critical point dryer (CPD 030, Bal-Tec). Samples were coated with gold-palladium in a Desk V sputter system (Denton Vacuum) and imaged on a field emission scanning electron microscope (Mira3 FE-SEM, Tescan or FE-SEM LEO 1550, Carl Zeiss Inc.). For actin depolymerization studies, cells were treated for 60 min with 10 μM LatA (Cayman Chemical) before fixation, where indicated.
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5

TEM Imaging of Cellular Ultrastructure

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Cells were fixed on TEM grids using freshly prepared Trump’s fixative (4 mL 10x PBS, 10 mL 16% paraformaldehyde, 4 mL 10% glutaraldehyde, 22 mL ddH2O). First, grids were rinsed with Trump’s fixative at 37°C, which was removed immediately. Fresh Trump’s fixative was added at 37°C and grids were stored at 4°C overnight before removal. Grids were then immersed in 1% osmium tetroxide in 0.05 M cacodylate buffer on ice for 40 minutes. Cacodylate buffer was added in excess for 10 minutes and removed. Fresh buffer was added for another 10 minutes. This process was repeated twice. Grids were washed with 25% and 50% EtOH on ice for 10 minutes, followed by 70% EtOH overnight. Grids were washed with 95%, 100%, 100% EtOH on ice for 10 minutes each before undergoing critical point drying (CPD). Samples were coated with Au-Pd (at 10 mA for 15 seconds) and imaged in a Mira3 FESEM (Tescan, Czech Republic). High-resolution images were acquired at 5 keV and a 3 mm working distance with the in-beam secondary electron detector. Brightness and contrast were adjusted using Adobe Photoshop to optimize visibility of cellular features. Image processing was done consistently across all conditions and regions. The vesicle size distribution shown in Fig. 3F was determined directly from the SEM image by estimating each vesicle as an ellipse and calculating the average of the minor and major axes.
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6

Characterization of Choline Salts

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The chemicals were purchased from Merck, Aldrich, or Fluka without further purification. A BRUKERDRX-4F00AVANCE Advance spectrometer was used to record the NMR spectra. Electrothermal 9100 apparatus was used to measure melting points uncorrected. Nicolet IR100 instrument recorded IR spectra over a range of 400–4000 cm−1 with spectroscopic grade KBr. Vibrating magnetometers/alternating gradient force magnetometers (MD Co., Iran, www.mdk-magnetic.com) were used for the magnetic measurement experiments. Diffraction pattern of the sample was determined using a Philips X‐Pert 1710 diffraction meter. A spectrum of energy-dispersive X-rays (EDX) and field emission scanning electron microscopy (FESEM). Images were recorded on Tescan MIRA3 FE-SEM. A BET analysis was conducted to ascertain the specific surface area of the composite that was prepared, utilizing the Micromeritics Instrument Corporation/TriStar II device. TGA measurements were performed on the Simultaneous Thermal Analyzer (STA 504) (www.tainstruments.com). The Mettler Toledo DSC 1 analyzer was used to carry out differential scanning calorimetry tests on choline salts.
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7

Freeze-drying Bacterial Colonies for SEM Analysis

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One or six-day old bacterial colonies grown on NB agar plates supplemented with 5 mM CaCl2 were frozen in nitrogen slush and freeze-dried. Freeze-dried bacterial colonies were removed from the agar and mounted directly on aluminum pegs using carbon tape. Subsequently, agar directly adjacent to the bacterial colonies was mounted on aluminum pegs using carbon tape. Mounted samples were then coated with gold-palladium in a Desk V sputter coater (Denton Vacuum, Moorestown, NJ). SEM was performed on a TESCAN Mira3 FESEM (Tescan, Czech Republic) using an In-Beam detector set at 5 kV.
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8

Platinum/Palladium Sputter Coating Protocol

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Samples were first sputter-coated with platinum/palladium on a high-resolution automatic sputter coater (Cressington 208HR) at 20 mA and 0.1 mbar Argon for 3 Â 20 s. The thickness of the applied coatings was measured with a built-in thickness controller to be 2.0 nm. They were then imaged using TESCAN MIRA3 FESEM operating at an accelerating voltage of 10 kV in SE mode.
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9

Quantitative Analysis of Hydrogel Microstructure

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Quantitative microstructural analysis of the different hydrogels was performed on micrographs captured with scanning electron microscopy (SEM). Blank hydrogels prepared as described above were dehydrated using an ethanol gradient. Samples were then placed into hexamethyldisilazane for 10 minutes to preserve collagen microstructure and air dried in a chemical hood. Dry samples were attached to SEM specimen mounts and coated with gold/palladium alloy in a sputter coater (SCD 500, Baltec). All SEM images were taken at 40,500 fold magnification (Mira3FESEM, Tescan). For SEM image analysis, fiber length and diameter were measured utilizing ImageJ (NIH). For each condition, 3 samples were analyzed, images from 5 randomly selected areas were taken and 7 fibers from each image were analyzed. Fiber diameter and length were measured utilizing ImageJ (NIH) following manual tracing of single surface-associated fibers (Supplementary Figure 1).
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10

Extracellular Matrix Nanostructure Analysis

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Cells were cultured on the 13 mm cover slip in a 24-well plate at 20,000 cells per well to prepare cells for SEM and EDX analysis. At the selected time point, cells were fixed with 2.5% (v/v) glutaraldehyde (Sigma-Aldrich, Cat. No. 111-30-8), pH 6–7 in a 0.1 M phosphate buffer for 1 h, followed by serial alcohol dehydration. Furthermore, prior to gold coating, critical point drying was accomplished using hexamethyldisilazane (HMDS) (Sigma-Aldrich, Cat. No. 999-97-3) [51 (link)]. The SEM and EDX were performed using the TESCAN Mira3 FE-SEM equipped with energy dispersive X-ray (Czech Republic). The average size of extracellular matrix (ECM) nanostructures was determined by examining SEM pictures from 10 distinct regions (n = 10) for each cell type using ImageJ.
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