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13 protocols using control igg

1

NK Cell Modulation in Chronic Hepatitis B

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A total of 2 × 105 PBMCs from patients with CHB were cultured in DMEM (HyClone SH30022.01) supplemented with 10% FBS and IL-2 (100 IU/ml), in the presence of an anti-human NKG2A blocking antibody (CloneZ199, Beckman Coulter, United States) or control IgG (BD Biosciences) at 37°C in 24-well plates. After 7 days, the phenotype and function of NK cells were analyzed by flow cytometry.
PBMCs (2 × 105) isolated from healthy donors were seeded into 24-well plates in DMEM in 20% serum from healthy controls containing 100 IU/ml IL-2, then 500 ng/ml HBeAg (Prospec, HBV272) was added into the wells and cells were cultured for 7 days at 37°C. In the presence of HBeAg, 50 ng/ml anti-human IL-10 neutralizing antibody (Clone25209, R&D, United States) or control IgG (BD Biosciences) was added. The intracellular cytokine in NK cells and the cytokine secreted in the supernatant were measured by flow cytometry.
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2

Immunoprecipitation of p130Cas Complexes

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Cells treated for 2 hours with eribulin or vehicle were lysed in a CHAPS buffer containing protease and phosphatase inhibitors. Equivalent amounts of protein were precleared with protein G beads (GE Healthcare), immunocomplexes containing p130Cas-IgG or control-IgG (BD Biosciences) were formed for 2 hours and then protein G beads used to precipitate the immunocomplexes. Beads were washed and prepared for immunoblotting.
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3

Bleomycin-Induced Dermal Fibrosis in Mice

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We induced dermal fibrosis in mice by bleomycin as previously described [29 (link)]. Bleomycin was dissolved in saline at 1 mg/ml. The saline or bleomycin was administered subcutaneously into the shaved back of the mice (male 8-week-old SCID mice). The administration of saline or bleomycin in the same site was carried out daily for up to 2 weeks. In other experiments, the saline, bleomycin, saline plus clodronate (FormuMax Scientific, CA, USA), or bleomycin plus clodronate were similarly administered to the mice (male 8-week-old C57BL/6 J mice). The administration of saline or bleomycin in the same site was carried out daily for up to 2 weeks, and the administration of clodronate was carried out intraperitoneally every 3 days for up to 2 weeks. In addition, the saline or bleomycin was similarly administered to the mice (male 8-week-old C57BL/6 J mice). The administration of saline or bleomycin in the same site was carried out daily for up to 2 weeks, and the administration of control IgG (2 mg/kg) or anti-IL-4Rα antibodies (2 mg/kg) (BD Biosciences, NJ, USA) was administered intraperitoneally every week for up to 2 weeks.
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4

Profiling ILF3 RNA Interactome

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ILF3 RIP was performed following standard methods (Feng et al., 2014 (link)). 4.5x107 MCF10A-DCIS cells were lysed in RIP buffer (150mM KCl, 25mM Tris pH 7.4, 5mM EDTA, 0.5% NP40, protease and RNAse inhibitors), precleared with streptavidin beads, and incubated overnight with 10ug either control IgG or anti-ILF3 (BD Biosciences cat #612154). Streptavidin beads were added for an additional 2hr incubation. Beads were washed with RIP buffer, incubated in TRIzol, and RNA was purified via chloroform extraction.
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5

Immunohistochemical Analysis of Macrophages in Tumor Tissue

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Immunohistochemistry was performed on day zero frozen tumor tissue sections processed and stained for the presence of macrophages using anti-F4/80 antibodies and a control IgG (BD Pharmingen, San Diego, CA, USA). Detection of Fe in control, untreated tumor tissue sections, and those obtained 24 h post-injection was performed in paraffin embedded formalin-fixed 5 µm thick tissue slices. Tissue sections were de-paraffinized, hydrated, and iron from ferumoxytol particles was detected with Perls’ Prussian Blue stain for Fe followed by counterstaining with nuclear fast red. Tumor cells and Fe+ cells were counted using ImageJ [30 (link)] from optical photomicrographs of the tumor sections.
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6

Mast Cell Tryptase Antibody Protocol

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Anti-mast cell tryptase (MCT) antibody (mouse monoclonal IgG, Clone AA1) was purchased from Abcam (Cambridge, UK). Anti-human LIF antibody (goat polyclonal IgG, P15018) for neutralization assay was purchased from R&D Systems (Minneapolis, MN, USA). The control IgG was obtained from BD Biosciences (San Jose, CA, USA). Toluidine blue O was purchased from Merck Millipore (115930, Darmstadt, Germany).
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7

Investigating Inflammatory Pathways in Cells

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Lipopolysaccharide (LPS) (Escherichia coli 0111:B4) was purchased from Sigma and used at 10 ng/ml. zVAD.fmk was purchased from ApexBio and used at 50 μM. Necrostatin-1 was purchased from Sigma and used at 10 μM. SM-164 was purchased from ApexBio and used at 1 μM. Poly(I:C) was from InvivoGen and used at 25 μg/ml. Recombinant mouse IFNβ (12400-1) and recombinant human IFNβ (11415-1) were purchased from PBL Assay Science and used at various concentrations as indicated. In all cases of IFNβ pre-treatment (overnight or 1 h), the IFNβ is washed away before addition of experimental conditions. Recombinant moue TNF was purchased from PeproTech and used at a concentration of 50 ng/ml. Ruxolitinib was purchased from cayman chemical and used at a concentration of 10 μM. Blocking antibody to mouse IFNAR (MAR1-5A3) and control IgG were purchased from BD Pharmingen and used at 20 μg/ml. Blocking antibody to human IFNAR (#21385–1) and control IgG were purchased from PBL and used at a concentration of 20 μg/ml. Recombinant proteins were re-constituted in 0.1% endotoxin free BSA from Akron Biotech (AK8917).
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8

Autologous TILs Cytotoxicity Assay

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Autologous CD8+ TILs were isolated from LUAD tissues and cultured for 72 h on plates coated with anti‐CD28 (37.51, eBioscience). Tumour organoids were harvested when their average diameters exceeded 50 μm. A portion of the organoid spheroids was digested into single cells for cell counting. The remaining organoid spheroids were cocultured with autologous CD8+ TILs at an E:T ratio of 20:1 in the presence of IL‐15 (R&D Systems), anti‐TIGIT antibody (MBSA43, eBioscience), their combination, or control IgG (BD Pharmingen). After 72 h of coculture, the organoids were dissociated into single cells using TrypLE Express and stained with 7‐AAD (eBioscience) for further flow cytometry analysis. To assess the time‐dependent killing of organoids, a green‐fluorescent probe specific for caspase 3/7 (Invitrogen), diluted at a ratio of 1:2000, was introduced into the coculture system to monitor apoptotic processes. The efficacy of T cell‐mediated cytotoxicity was evaluated over a 24‐h period using the LionheartFX, a live‐cell real‐time fluorescence imaging system developed by Biotek.
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9

CFSE-based Cytotoxicity Assay for CD8+ T Cells

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A standard 4‐h carboxyfluorescein diacetate succinimidyl ester (CFSE)‐based assay was used to assess the cytotoxicity of CD8+ T cells against H2228 cells. Briefly, H2228 cells were labelled with 10 μM CFSE (eBioscience) and then seeded onto plates as target cells. Subsequently, CD8+ T cells were isolated and exposed to H2228 cells at various E:T ratios. After incubation in the presence of blocking antibodies for 4 h, the cells were stained with 7‐AAD (eBioscience) followed by flow cytometry analysis. The blocking antibodies used were as follows: anti‐CD155 antibody (D171, GeneTex), anti‐TIGIT antibody (MBSA43, eBioscience), anti‐CD96 antibody (6A6, eBioscience) and control IgG (BD Pharmingen).
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10

Cell Surface Marker Expression Analysis

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Cells (106) were dissociated using Accutase and washed once with PBS. For detection of cell surface ECAD, cells were suspended in PBS with 3% BSA and incubated with anti‐ECAD Ab (20874‐1‐AP; Proteintech) (2 μg/mL) and control IgG (I8104; Sigma) (2 μg/mL) for 2 h. Cells were then washed with PBS and incubated with Alexa488‐conjugated secondary Ab (A‐11008; Molecular Probes) for 1 h. Cells were washed once with PBS, and then resuspended in 1 mL PBS for flow cytometry using the BD FACSAria II (BD Bioscience). For CD69, experiments were carried out with slight modifications using anti‐CD69 Ab (ab51862; Abcam). For β1‐integrin (CD29), phycoerythrin‐conjugated Ab (#555443; BD Pharmingen) and control IgG (#555749; BD Pharmingen) were used.
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