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3 protocols using brca1 c20

1

SDS-PAGE and Western Blot Analysis

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Protein fractions were also analyzed by SDS-PAGE denaturing gels followed by staining with SimplyBlue SafeStain solution (Invitrogen) or Western blotting as described (15 (link)). For Western blot analysis, the following primary antibodies were used: BRCA1 (C-20; Santa Cruz Biotechnology, sc-642), ubiquitin-pAb (Enzo Life Sciences, ADI-SPA-200), p53 (DO-1; Santa Cruz Biotechnology, sc-126), K63-linkage specific polyubiquitin (D7A11; Cell Signaling, #5621) and β-actin (Sigma-Aldrich, A5441). Western blot quantification and densitometry measurements were performed using Image Lab™ Software (Bio-Rad). The band intensities were selected using the volume tool. Local subtraction and linear regression methods were implemented to eliminate the local background values and to quantify the band intensities.
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2

Antibody-based Analysis of DNA Damage Response

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The antibodies used against FANCJ (Bethyl Laboratories, Montgomery, TX, USA), BARD1 (BL518; Bethyl Laboratories), BRCA1 (C20; Santa Cruz Biotechnology, Santa Cruz, CA, USA), KAP‐pS824 (Bethyl Laboratories), RAP80, (Bethyl Laboratories), RNF168 (ABE367; Millipore, Darmstadt, Germany), and RAD51 (BioAcademia, Osaka, Japan) were rabbit polyclonal antibodies. The antibodies against CtIP (Active Motif, Carlsbad, CA, USA), conjugated ubiquitin (FK2; Nippon Bio‐Test Laboratories, Tokyo, Japan), HP1α (Millipore), HP1β (1MOD‐1A9; Millipore), HP1γ (2MOD‐1G6; Millipore), H3K9me2 (CMA307; Millipore), γH2AX (JBW301; Millipore), and α‐ and β‐tubulin (DMIA+BMIB; Neomarkers, Fremont, CA, USA) were mouse mAbs.
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3

Immunoblotting of Nuclear Proteins

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Cell lysates were prepared with 0.5% NP-40 buffer (50 mM Tris–HCl [pH 7.5], 0.5% Nonidet P-40, 150 mM NaCl, 50 mM NaF, 1 mM dithiothreitol, 1 mM NaVO3, 1 mM PMSF, 2 µg/ml aprotinin, 2 µg/ml leupeptin, 10 µg/ml trypsin inhibitor, and 150 µg/ml benzamidine) and subjected to immunoblotting, as previously described [15 (link), 16 (link)]. Benzonase nuclease (125 U/ml; Millipore, MA, USA) and 2 mM MgCl2 were supplemented for detection of nuclear proteins. The relative protein expression levels of Trop-2 were measured using a densitometer and normalized to tubulin. The following antibodies were used: rabbit monoclonal antibody against Trop-2 (Abcam, Cambridge, UK), AKT (Cell Signaling Tech, MA, USA), SQSTM1/p62 (D5E2; Cell Signaling Tech), rabbit polyclonal antibody against ERα (Millipore), BRCA1 (C20; Santa Cruz, CA, USA), HER2 (Cell Signaling Tech), pAKT (phospho-Ser473 AKT; Cell Signaling Tech), TFEB (Cell Signaling Tech), pRSK (Pan phospho-Ser221, Ser227, Ser218, Ser232; Invitrogen), LC3 (2775; Cell Signaling Tech), mouse monoclonal antibody against γH2AX (JBW301, Millipore), RSK1 (A-10; Santa Cruz), RSK2 (E-1; Santa Cruz), β-actin (6276; Abcam), and α-tubulin (DM1A; Richard-Allan Scientific, MI, USA).
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