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21 protocols using easysep kits

1

PBMC Isolation and Cell Purification

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Blood from patients with HNSCC included in the clinical trial was collected. PBMC were purified by Ficoll-Paque PLUS centrifugation (Amersham Biosciences) and used fresh for cell isolation and ELISpot assay or stored frozen. DCs were generated as described previously (Lopez-Albaitero et al., 2009b (link)). CD14+ monocytes, NK cells, and CD8+ T cells were purified using EasySep kits (Stem cell technologies) and purity was more than 95% (Lopez-Albaitero et al., 2009a (link)).
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2

Isolation and Culture of Human and Murine Neutrophils

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Cultures of T84 IECs were grown as described previously (26 (link), 38 (link), 73 (link)). Human PMN were isolated from whole blood obtained from healthy male and female volunteers, with approval from the University of Michigan IRB on human subjects, using a previously described Polymorphprep density gradient centrifugation technique (73 (link), 74 (link)). Isolated PMN were 98% pure and > 95% viable and were used for all described assays within 2 hours of blood draw. Murine neutrophils were isolated from bone marrow extracted from the femur and tibias of male and female C57BL/6 mice using EasySep kits from Stem Cell Technologies as previously described (75 (link)).
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3

T Cell-Mediated Tumor Immunity Modulation

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The B16 mouse melanoma and 3LL mouse Lewis Lung carcinoma cell lines were obtained from American Type Culture Collection and maintained in RPMI 1640 media (B16) or DMEM media (3LL) containing 10% fetal bovine serum (FBS), respectively. For tumor challenge, B16 or 3LL cells were implanted subcutaneously into 8-10 weeks old Stat3+/+ or Stat3−/− mice (5×105/mouse). Tumors, spleens or tumor-draining lymph nodes (TDLN) were harvested 10-14 days after tumor-cell injection for further analysis. For T cell adoptive transfer, mice received intravenous injection of 8×106 CD8+ T cells 1 day prior to tumor challenge (3×105 B16 cells). CD8+ T cells were isolated from spleens of 8-10 weeks old Stat3+/+ or Stat3−/− mice by magnetic beads enrichment using CD8+ T cells negative selection EasySep kits (StemCell Technologies). Subcutaneous injection near the tumor sites of PBS (vehicle control), anti-IFNγ peptide (JPT Peptide, 200 μg/mouse) and CXCR3 antagonist SCH 546738 (MedChem Express, 600 μg/mouse) started on day 6 post tumor injection and performed daily for up to one week.
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4

Interleukin-Mediated T Cell Activation by cDC1-like Cells

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BM cells were differentiated into cDC1-like cells and incubated for 4 h in 96-well U-bottom plates (5 × 104 per well) in 200 µl of medium in the presence of 2 mg OVA protein (10 mg ml–1; vac-stova; InvivoGen) and individual interleukins (IL-2, IL-12, IL-15, IL-18, IL-21, IL-23 or IL-27). The concentration of each interleukin was 2 ng ml–1, 8 ng ml–1 or 20 ng ml–1 (in 200 µl). Meanwhile, OT-I CD8+ and OT-II CD4+ cells were isolated using EasySep kits (STEMCELL Technologies) and resuspended in T cell medium (complete RPMI medium with 50 μM beta-mercaptoethanol, minimal non-essential amino acids, 1 mM sodium pyruvate and 10 mM HEPES). OVA-loaded cDC1-like cells were then washed and co-cultured with OT-I or OT-II cells in T cell medium in the presence of the aforementioned interleukins. Co-culture of OVA-loaded cDC1-like cells with OT-I or OT-II cells was continued for 3 days and 5 days, respectively. T cell activation was measured by intracellular staining with antibodies against IFNγ (clone XMG1.1, BD Biosciences) using BD Golgi Stop kit (BD Biosciences).
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5

Isolation and Activation of T Cell Subsets

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Human memory CD4+CD45RO+ and memory CD8+CD45RO+ T cells were purified from PBMC of healthy buffy coat donors. PBMC were first isolated from buffy coats (Gulf Coast Regional Blood Center, Houston, TX) by using Ficoll-Paque PLUS (GE Healthcare). Memory CD4 and memory CD8 T cells were then negatively selected from PBMC with magnetic bead-based EasySep kits (Stemcell Technologies). Purities of memory CD4+CD45RO+ T cells were usually >90% and memory CD8+CD45RO+ T cells >80% as determined by flow cytometry. Natural killer cells were purified from PBMC with negative selection kits (Stemcell Technologies), and CD3-CD56+ purity was >90%. Cells were cultured at 37°C + 5%CO2 in complete RPMI-1640 medium, supplemented with 10% FBS, 0.1 mM MEM nonessential amino acids, 2mM sodium pyruvate, 2mM HEPES, 1× antibiotic-antimycotic and 2mM L-glutamine.
Most experiments involved no stimulation (UT) or stimulation of 1-5×105 memory CD4 and memory CD8 T cells, or NK cells (200 μl/well of 96-well flat-bottom plates, or 1 ml/well of 24-well plates, as indicated) for 24 hrs with 1 ml/ml coated CD3 (clone UCHT1, BD Biosciences) or soluble CD3 (clone CD3-2, Mabtech) + 1 μg/ml CD28 (clone CD28.2, BD Biosciences) mabs. For some experiments, cells were stimulated with 100 ng/ml recombinant IL2 (Biolegend) or soluble CD3 mab alone for 24 hrs with or without brefeldin (GolgiPlug, BD Biosciences).
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6

Isolation of NK Cells from Blood

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After approval by our Institutional Review Board (UPCI protocol 99–069), informed consent was obtained from each subject before blood withdrawal. Blood from healthy donors or patients with HNSCC was drawn and lymphocytes were purified by Ficoll-Paque PLUS centrifugation following standard protocol (Amersham Biosciences). NK cells were purified using NK negative selection magnetic EasySep kits (Stem cell technologies). Purity of the selection was more than 95% FcγRIIIa+, CD56+, and CD3.
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7

Isolation and Characterization of NK Cells and HNC Cell Lines

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Following Institutional Review Board (UPCI protocol 99-069) approval and informed consent, blood was obtained from healthy donors (Western PA blood bank) or HNC patients treated with cetuximab (NCI-2011-02479, NCT01218048). Lymphocytes were purified by Ficoll-Paque PLUS centrifugation (Amersham Biosciences, Uppsala, Sweden) and stored frozen. DC were generated as described previously (2 (link)). NK cells were purified using EasySep kits (Stem cell technologies, Vancouver, BC, Canada) and purity was >95% CD16+, CD56+, CD3 evaluated with flow cytometry (23 (link)).
The HNC cell lines PCI-15B (HLA-A2EGFR+) was isolated from patient treated at the University of Pittsburgh Cancer Institute (Pittsburgh, PA) through the explant/culture method. JHU-029 (HLA-A2EGFR+ and MAGE-3+) cell line was a kind gift from Dr. James Rocco (Harvard Medical School, Boston, MA) in January 2007. All cell lines were authenticated, and validated as unique using STR profiling and HLA genotyping every 6 months (24 (link), 25 (link)). Cell lines were grown in IMDM (Sigma, St. Louis, MO) supplemented with 10% FBS (Cellgro, Manassas, VA), 2% L-glutamine and 1% penicillin/streptomycin (Invitrogen, Carlsbad, CA) at 37°C in a 5% CO2, 95% humidity atmosphere. Adherent tumor cells were detached by warm Trypsin-EDTA (0.25%) solution (Invitrogen, Carlsbad, CA).
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8

Adoptive Transfer of OT-I CD8+ T Cells

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CD45.1+ OT-I mice were used as cell donors for adoptive cell transfer into syngeneic CD45.2+ C57BL/6J recipient animals. Lymphocytes were isolated from spleen and OT-I CD8+ T cells purified using EasySep kits from StemCell Technology according to the manufacturer’s protocol. 1 × 104 OT-I CD8+ T cells were injected intravenously via the tail vein in a 100-µl volume a day prior to i.n. immunization.
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9

Isolation and Analysis of Myeloid Cells

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Adherent BMCs were digested with Accutase (Millipore), suspended in growth medium, pelleted by centrifugation at 1200 rpm for 5 min. Cells were resuspended in 0.1% BSA-PBS at a concentration 1×108 cells/ml for magnetic bead separation using EasySep kits (Stem Cell Technology) by labeling cells with APC or FITC -anti-mouse c-Kit, PE -anti-mouse CD11b, or APC -anti-human CD14 (Biolegend). For FACS analysis, 1×106 cells were labeled with APC-anti-mouse CD11b, APC/Cy7-anti-mouse F4/80, PE-anti-mouse-RANK (CD256), BrillantViolet421-anti-mouse CD115, PE-anti-human CD33, APC-anti-human CD34, FITC-anti-human CD14, BrillantViolet421-anti-human CD16, and analyzed by MACQuant Analyzer (Miltenyi Biotec).
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10

Isolation and Culture of Multiple Myeloma Cells

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PBMC, MM and HS-5 cell lines, primary BMSCs from patients were isolated and cultured as previously described [31 (link), 33 (link), 43 (link)]. Malignant CD138+ PCs and healthy B cells were isolated with EasySep™ kits (STEMCELL Technologies, USA), after achieving informed consent according to the declaration of Helsinki. The internal Institutional Board approved the use of human material. SaMMi cell line was obtained from a 81 year old woman with a 20% PCs in the bone marrow. CD138+ SaMMi PCs were cultured in DMEM 20% FBS with the addition of IL-6 2.5 ng/ml. Co-cultures of HS-5 or BMSCs with INA-6 or patient derived CD138+ PCs were stabilized as described in [33 (link)]. The clinical features of the patients analyzed and the immunophenotype/karyotype of SaMMi are detailed in Tables 1 and 2.
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