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11 protocols using ab126783

1

Immunohistochemical Analysis of Bladder Cancer

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Immunohistochemical analysis (IHC) was carried out in 240 human bladder cancer tissues using an anti-BMI1 (Abcam, Cat. No. ab126783) and anti-P-GP (Abcam, Cat. No. ab170904) as described previously [35 (link), 36 (link)]. The immunostaining degree of paraffin sections was evaluated and averaged by two independent researchers, who were not informed of histopathological characteristics and patients’ information. The positive degree of staining was assessed: 0 (no positive tumor cells (PTCs)), 1 (<10% PTCs), 2 (10-50% PTCs), and 3 (>50% PTCs). The intensive degree of staining was estimated: 0 (no staining), 1 (weak, light yellow), 2 (moderate, yellowish brown), and 3 (strong, brown). The staining index (SI) was calculated: staining index = staining intensity × proportion of positive tumors staining. According to the heterogeneity measurement of relapse-free survival rate by log-rank test statistics, the cut-off value was selected to define the high or low expression of BMI1. An optimal cut-off value was determined. The SI ≥ 6 was defined as high-expressing tumours, and the SI < 6 was defined as low-expressing tumours.
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2

Immunohistochemical Analysis of Tumor Biomarkers

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Tissues were embedded in paraffin, then sectioned into 4 μm thick slides, deparaffinized in xylene, rehydrated in a graded series of alcohol, and blocked with goat serum. After being stained with primary antibodies at 4°C overnight, sections were washed thrice then incubated with the secondary antibody for 20 min. After that, sections were reacted with 3,3′‐diaminobenzidine and counterstained with hematoxylin. Images were obtained by microscopy. Normal and tumor tissues were scored by evaluating their staining percentages. All the antibodies were listed as follows: anti‐Ki67 (ab15580, Abcam), anti‐E‐cadherin (ab231303, Abcam), anti‐SLUG (ab128485, Abcam), anti‐c‐MYC (ab32072, Abcam), anti‐BMI1 (ab126783, Abcam), and Goat anti‐Rabbit IgG H&L (ab205718, Abcam).
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3

Protein Expression Analysis in Cells

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Details of protein extraction, Western blotting, IHC staining and IHC score obtainment referred to our previous studies [2 (link)]. Primary antibodies against GAPDH (ab9458, Abcam, UK), SMYD3 (ab187149, Abcam, UK), HMGA2 (ab97276, Abcam, UK), NANOG (ab109250, Abcam, UK), c-MYC (ab32072, Abcam, UK), BMI1 (ab126783, Abcam, UK), Histone H3 (ab1791, Abcam, UK), SOX2 (ab92494, Abcam, UK), H3K4me3 (ab8580, Abcam, UK) and Ki67 (ab15580, Abcam, UK) were utilized.
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4

Molecular Mechanisms of Epithelial-Mesenchymal Transition

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Anti-NEK2 antibodies (610593) for used in western blot analysis and immunofluorescence microscopywere purchased from BD Biosciences (San Jose, CA, USA) and those (sc-55601) for performing NEK2 kinase assay were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-ALDH1 antibodies (611194) were acquired from BD Biosciences. Antibodies against Smad2/3 (#5678), phosphorylated Smad2 (#3108), β-catenin (#9562), and phosphorylated β-catenin (Ser33/Ser37/Thr41, Ser45, or Ser675; #9561, #9564, or #4176, respectively) were purchased from Cell Signaling Biotechnology (Danvers, MA, USA). Antibodies against E-cadherin (ab15148), N-cadherin (ab18203), vimentin, Snail (ab180714), Twist (ab175430), Bmi1 (ab126783), Sox2 (ab97959), octamer-binding transcription factor 4 (Oct4; ab109183), Kruppel-like factor 4 (Klf4; ab129473) and Nanog (ab109250) were obtained from Abcam (Cambridge, MA, USA). Anti-β-actin antibody (sc-4778) and anti-Sp1 antibody (sc-17824) were obtained from Santa Cruz Biotechnology, and wortmannin, MG132, H89, PP2 and bisindolylmaleimide I (BMI) were purchased from Calbiochem (San Diego, CA, USA). Wnt3a was purchased from R&D Systems Inc. (Minneapolis, MN, USA). CGK062 was prepared as previously described (23 (link)).
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5

Protein Expression Analysis in Stem Cells

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Total proteins were extracted from using RIPA buffer (Beyotime, Shanghai, China). BCA protein assay kit (CoWin Biotechnology) was used to examine protein concentrations. Protein was separated by SDS-PAGE, and transferred onto PVDF membrane. Membranes were incubated with following primary antibodies RNF220 (ab69357, 1:700; Abcam, Cambridge, MA, USA), SOX2 (ab92494, 1:1500; Abcam, Cambridge, MA, USA), OCT4 (ab17929, 1:1000; Abcam, Cambridge, MA, USA), NANOG (ab109250, 1:5000; Abcam, Cambridge, MA, USA), USP22 (ab195289, 1:2000; Abcam, Cambridge, MA, USA), BMI1 (ab126783, 1:30,000; Abcam, Cambridge, MA, USA), p65 (ab32536, 1:10,000; Abcam, Cambridge, MA, USA), PCNA (ab18197, 1:5000; Abcam, Cambridge, MA, USA), and β-actin (ab8227, 1:3000; Abcam, Cambridge, MA, USA) overnight at 4°C. Then, membranes were incubated with HRP-conjugated goat anti-rabbit immunoglobulin G secondary antibody (ab205718, 1:3000; Abcam). β-actin was used as an internal control to normalize the analyzed samples [16 (link)].
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6

Human Liver Cancer Cell Line Culture

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Human liver cancer cell lines, HepG2, PLC, and HepB3 were obtained from American Type Culture Collection (Manassas, VA, United States). Huh7 was obtained from the Japan Society for the Promotion of Science (Tokyo, Japan). These cells were maintained in 1,640 medium (Gibco, Thermo Fisher, Waltham, MA, United States) supplemented with 10% heat-inactivated fetal bovine serum (Hyclone) and penicillin/streptomycin at 37°C in a humidified atmosphere of 5% CO2.
The reagents used in this study were: Antibodies of anti-GINS1 (ab181112), anti-BMI1 (ab126783), and anti-RAS (ab52939) were purchased from Abcam (Cambridge, United Kingdom). KLF4 (D1F2) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; D16H11) were obtained from Cell Signaling Technology (Danvers, MA, United States).
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7

Immunohistochemical Analysis of GIPC2 and BMI-1

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Paraffin sections (8 μm) were stained with antibodies against GIPC2 (sc-515441, Santa Cruz) or BMI-1 (ab126783, Abcam) at a 1:100 dilution. The sections were incubated with biotinylated IgG (1:200, ZSGB-Bio Co.) at 37 °C for 20 min, followed by incubation with HRP-labeled streptavidin at 37 °C for 15 min. Color development proceeded for 5 min at room temperature using diaminobenzidine, followed by rinsing with distilled water. Counterstaining was performed with hematoxylin. The immunohistochemistry (IHC)-staining intensity was classified based on the quantized values from Image J, as follows: +1, <1.00 positive staining; +2, 1.01–5.00 positive staining; +3, >5.01 positive staining.
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8

Immunohistochemical Analysis of CBX4 and BMI-1

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Paraffifin-embedded sections were deparaffifinized and rehydrated. Endogenous peroxidase activity was blocked by incubation in 0.3% hydrogen peroxide for 30 min, then the slides were microwaved and boiled in 10 mM citrate buffer (pH 6.0) for antigen retrieval. Nonspecific antigens were blocked by incubation in sheep serum for 30 min. Slides were incubated overnight at 4°C with anti-CBX4 (1:100, Abcam, ab242149) and anti-BMI-1 (1:100, Abcam, ab126783).
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9

Quantification of Protein Expression by Western Blot

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The concentration of protein extracted from tissues and cells was measured using the BCA kit (Wuhan Boster Biological Technology., Ltd, Wuhan, Hubei, China). The extracted protein was then added to wells with loading buffer (30 μg/well) and boiled at 95°C for 10 min. Proteins were then separated on 10% polyacrylamide gels (Wuhan Boster Biological Technology., Ltd, Wuhan, Hubei, China) by electrophoresis for 45-70 min at a voltage of 80-120 V and with a wet transmembrane voltage of 100 mV for 45-70 min. Proteins were then transferred onto polyvinylidene fluoride (PVDF) membranes, sealed with 5% bovine serum albumin (BSA) for 1 hour at room temperature, and incubated with Bmi-1 (1:20000 dilution; ab126783, Abcam, Cambridge, UK) and β-actin (1:10000 dilution; ab8226, Abcam, Cambridge, UK) primary antibodies overnight at 4°C. Membranes were then rinsed with Tris-buffered saline/Triton-X100 (TBST) (3 times × 5 min) and incubated with corresponding secondary antibodies at room temperature for 1 h. The membranes were washed again (3 times × 5 min) and chemiluminescence reagent was added for image development. Images were developed using a Gel Doc EZ imager (Bio-Rad, Hercules, California, USA) with β-actin as used as internal reference. The gray value of the target band was analyzed using western blotting image analysis software (Alpha Innotech, Hayward, California, USA).
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10

BMI1 and p53 Protein Interaction Study

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The indicated cells were lysed, and then immunoprecipitated by anti-BMI1 (Abcam, Cat. No. ab126783) and anti-p53 (Abcam, Cat. No. ab1101) antibodies. Then the immune complexes were detected by anti-BMI1 (Abcam, Cat. No. ab126783) and p53 (Abcam, Cat. No. ab1101) antibodies, and visualized with an ECL analysis system.
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