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5 protocols using casp1

1

Western Blot Analysis of NLRP3 Inflammasome

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Fresh mouse brains were collected and sliced into 2 mm sections in a mouse brain mold (RWD Company; Shanghai, China). We chose the ipsilateral cerebral hemisphere (2 mm posterior to the bregma), including the cortex and striatum, for Western blotting. Proteins were separated on a 10% sodium dodecyl sulfate (SDS)-polyacrylamide gel (PAGE) and then transferred to a polyvinylidene fluoride (PVDF) membrane. The membrane was blocked in the protein-free rapid blocking buffer (EpiZyme; Shanghai, China) for 15 min. Then, membranes were incubated with primary antibodies against NLRP3 (1:1000; Cell Signaling Technology), ASC (1:1000; Cell Signaling Technology), CASP1 (1:1000; Santa Cruz Biotechnology), β-actin (ACTB; 1:1000; Santa Cruz Biotechnology) for 16 h at 4 °C. Next, membranes were thrice washed with tris-buffered saline containing 0.1% Tween 20 (TBST) buffer for 15 min and incubated with secondary antibodies conjugated with horseradish peroxidase (HRP) at room temperature for 1 h. The membranes were visualized using an enhanced chemiluminescence kit (ECL; Pierce; Waltham, MA, USA). Protein bands were quantified with the Image J. software.
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2

Antibody-based Protein Detection Protocol

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The following antibodies were used in this study: HA tag (Santa Cruz Biotechnology, #sc-805, 1:1000 for western blot), GAPDH (Santa Cruz Biotechnology, #sc-47724, 1:1000 for western blot), ASC (Adipogen, #AL-177, 1:1,000 for western blot), CASP1 (Santa Cruz Biotechnology, #sc-622, 1:1000 for western blot), IL-1B (R&D systems, #AF-201, 0.1 µg/mL for western blot, 2 µg/mL for immunochemistry), FLAG (SigmaAldrich, #F3165, 1:2000 for western blot), GFP (Abcam, #ab290, 1:2,000 for western blot). IL-1B measurements were carried out with human IL-1B ELISA kit (BD, #557953, follow supplier instructions).
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3

Immunofluorescence Analysis of Neuroinflammation

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Brain sections were fixed in 4% paraformaldehyde (PFA) for 10 min, and the cell membrane was disrupted with 0.3% Triton X-100 for 10 min. Blocking was performed with 1% bovine serum albumin (BSA) for 1 h. Next, brain sections were incubated with antibodies against cluster of differentiation 11b (CD11b; 1:200, Cell Signaling Technology; Boston, MA, USA), CASP1 (1:200, Santa Cruz Biotechnology; Paso Robles, CA, USA), or ASC (1:200, Cell Signaling Technology) at 4 °C for 16 h. The sections were washed thrice with PBS and incubated at room temperature for 1 h with a secondary antibody corresponding to the primary antibody. The secondary antibody was washed off with PBS and stored at −20 °C after adding an antifade mounting medium containing 4′,6-diamidino-2-phenylindole (DAPI; Life Technologies; Mulgrave, Australia). Deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) staining was performed with a one-step TUNEL apoptosis assay kit (Meilunbio; Shanghai, China). Stained sections were observed with the TCS SP5 Confocal Scanning System (Leica; Wetzlar, Germany). Four fields along the peri-infarct regions were selected for each section.
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4

Immunohistochemical Analysis of Glioma Markers

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All glioma patient tissues, including grade 2, 3, and 4, used in IHC were obtained surgically, and the number of patients and pathological information were recorded in Supplementary Table S1. Formalin-fixed, paraffin-embedded glioma blocks were serially sectioned at 4 µm thickness and deparaffinized in xylene (Thermo Fisher Scientific). The sections were immersed in ethanol, rehydrated, and incubated with goat serum to block nonspecific binding. They were then incubated at 4 °C overnight with primary antibodies against Gal-9 (mouse monoclonal Ab; Abcam, Cambridge, UK), TIM-3 (rabbit monoclonal Ab; Abcam), GFAP (rabbit monoclonal Ab; Abcam), Iba-1 (rabbit monoclonal Ab; Abcam), NLRC4 (rabbit polyclonal Ab; Abcam), or caspase-1 (mouse monoclonal Ab; CASP-1; Santa Cruz Biotechnology, Dallas, TX, USA). Secondary antibodies, including goat anti-rabbit IgG (Abcam) and donkey anti-mouse IgG (Abcam), were applied at room temperature for 1 h. The sections were examined under a confocal laser scanning microscope (Zeiss LSM; Carl Zeiss AG, Jena, Germany) and quantified using the ImageJ software v1.52a (NIH, Bethesda, MD, USA).
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5

Antibody Characterization for Inflammasome

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The following antibodies were used in this study: HA tag (Santa Cruz Biotechnology, #sc-805), GAPDH (Santa Cruz Biotechnology, #sc-47724), ASC (Adipogen, #AL-177), CASP1 (Santa Cruz Biotechnology, #sc-622), IL1B (R&D systems, #AF-201), FLAG (SigmaAldrich, #F3165), GFP (Abcam, #ab290). IL-1B measurements were carried out with human IL-1B ELISA kit (BD, #557953).
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