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Alexa fluor 555 conjugated goat anti rabbit igg secondary antibody

Manufactured by Thermo Fisher Scientific
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Alexa Fluor 555-conjugated goat anti-rabbit IgG secondary antibody is a fluorescent-labeled secondary antibody used for the detection and visualization of rabbit primary antibodies in various immunoassays and imaging applications.

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7 protocols using alexa fluor 555 conjugated goat anti rabbit igg secondary antibody

1

SARS-CoV-2 Spike Protein Infection Assay

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The Vero cells were washed with PBS, dislodged with 0.25% Trypsin–EDTA (Sigma life sciences), and seeded into 96‐well imaging plates (Greiner) at a density of 104 cells per well in culture media (Dulbecco's modified Eagle medium (DMEM) containing 10% FBS, 1% penicillin and streptomycin, 1% l‐glutamine and 1% non‐essential amino acids). Cells were incubated for 24 h to allow time for adherence. Virus or cells were treated with polymeric solutions, diluted in media, 1 h prior to infections. Cells were subsequently infected with SARS‐CoV‐2 virus England 2 stock 106 IUml−1 (kind gift from Christine Bruce, Public Health England) diluted 1/150 in culture media. Cells were fixed in ice‐cold MeOH after infection. Cells were then washed in PBS and stained with rabbit anti‐SARS‐CoV‐2 spike protein, subunit 1 (The Native Antigen Company), followed by Alexa Fluor 555‐conjugated goat anti‐rabbit IgG secondary antibody (Invitrogen, Thermofisher). Cell nuclei were visualized with Hoechst 33342 (Thermofisher). Cells were washed with PBS and then imaged and analyzed using a ThermoScientific CellInsight CX5 High‐Content Screening (HCS) platform. Infected cells were scored by perinuclear fluorescence above a set threshold determined by positive (untreated) and negative (uninfected) controls.
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2

Cytological Assessment of Mebendazole Effects

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Briefly, 2 × 105 cells were seeded in µ-slide 8-well chambered coverslips (Ibidi, Gräfelfing, Germany) and incubated in culturing medium containing either DMSO or mebendazole for 24 h. In addition, 5 µm cryosections of tumor samples of the animal studies that have been air-dried for 10 min were used. Cells or tissue sections were fixed in 4% paraformaldehyde/PBS for 15 min, permeabilized with 0.5% Triton X-100 for 1 h and then blocked in PBST containing 3% BSA and 0.1% glycine for 10 min. Slides were then incubated overnight at 4 °C with mouse anti-α-tubulin (clone DM1A) (Sigma-Aldrich), Ki67 (Abcam, Cambridge, UK) and cleaved caspase-3 (Cell Signaling Technology, Danvers, MA, USA) antibodies in 5% BSA/PBS at dilutions of 1:100, 1:250, and 1:100, respectively. The next day, following serial washing steps, slides were incubated with Alexa Fluor 555-conjugated goat anti-rabbit IgG secondary antibody (Invitrogen) in a dilution of 1:250 in 5% BSA and 0.1% Triton X-100. Slides were counterstained with 1 µg/mL Hoechst 33342 (Invitrogen) at room temperature in the dark for 1 h. Images of tubulin staining were captured with the 40× objective of the Axiovert 200M microscope equipped with an AxioCam MRm (Zeiss, Jena, Germany) and abnormal spindles were counted by ImageJ. Ki67 and caspase-3 stainings were captured with the EVOS M7000 microscope (Invitrogen).
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3

Multiplexed Detection of GZMB and GZMK in Tumor Samples

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RNAscope (Advanced Cell Diagnostics) in situ hybridization and immunofluorescence staining were performed on 4 μm FFPE sections from cystectomy specimens with existing scRNA-seq and TCR-seq data. Tissues were pre-treated with target retrieval reagents and protease to improve target recovery based on guidelines provided in the RNAscope Multiplex Fluorescent Reagent Kit v2 Assay protocol. Probes for human GZMB and GZMK mRNA (ACD) were incubated at 1:700 dilution for 2 hr 40 min. The probe was then hybridized with Opal 7-Color Manual IHC Kit (PerkinElmer), with detection of GZMB and GZMK using Opal 620 and Opal 540 respectively. Samples were then immunofluorescence stained for human CD4 (Cell Marque) which was detected using Alexa Fluor 555-conjugated goat anti-rabbit IgG secondary antibody (Invitrogen). Tissues were counterstained with DAPI. Slides were imaged using a TCS SP8 X white light laser inverted confocal microscope (Leica Microsystems). No staining was seen with negative control probes (for RNAscope) or with secondary antibody alone (for immunofluorescence) for tumor tissue from cystectomy specimens (shown in Figure 4F) or healthy tonsil tissue (data not shown).
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4

Quantifying Ferroportin and Hepcidin in Spheroids

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Primary patient spheroids were embedded in OCT and sectioned to generate serial cuts that were numbered sequentially from 1–10. When comparing spheroids derived from different cells, section numbers were matched. Sections were fixed with 4% formaldehyde for 15 minutes and blocked with 5% BSA at 4°C overnight. Anti-human ferroportin (Amgen (38C8)) and anti-rabbit Hepcidin (Fitzgerald Industries International; cat#70R-6236) were applied for one hour followed 1:800 dilutions of rhodamine-green conjugated goat anti-human secondary antibody (Jackson ImmunoResearch, West Grove, PA, USA) for ferroportin and Alexa-fluor 555 conjugated goat anti-rabbit IgG secondary antibody (Invitrogen, Carlsbad, CA, USA) for hepcidin. Slides were mounted with ProLong Gold anti-fade reagent (Invitrogen). Images were acquired using a fluorescent inverted microscope (Zeiss Axio Vert.A1; Carl Zeiss Microscopy).
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5

Quantifying Ferroportin and Hepcidin in Spheroids

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Primary patient spheroids were embedded in OCT and sectioned to generate serial cuts that were numbered sequentially from 1–10. When comparing spheroids derived from different cells, section numbers were matched. Sections were fixed with 4% formaldehyde for 15 minutes and blocked with 5% BSA at 4°C overnight. Anti-human ferroportin (Amgen (38C8)) and anti-rabbit Hepcidin (Fitzgerald Industries International; cat#70R-6236) were applied for one hour followed 1:800 dilutions of rhodamine-green conjugated goat anti-human secondary antibody (Jackson ImmunoResearch, West Grove, PA, USA) for ferroportin and Alexa-fluor 555 conjugated goat anti-rabbit IgG secondary antibody (Invitrogen, Carlsbad, CA, USA) for hepcidin. Slides were mounted with ProLong Gold anti-fade reagent (Invitrogen). Images were acquired using a fluorescent inverted microscope (Zeiss Axio Vert.A1; Carl Zeiss Microscopy).
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6

Immunofluorescence Staining of Paraffin-Embedded Samples

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The harvested samples were fixed with 4% paraformaldehyde for 24 h, decalcified with 50 nM EDTA solution for 2 weeks, and embedded in paraffin. The sections were deparaffinized, rehydrated, incubated in 0.5% Triton X‐100 solution for 30 min and then with 10 mm citrate buffer and microwaved at 750 W for 20 min for antigen retrieval. After returning to room temperature, the sections were incubated with 5% normal goat serum for antigen blockade. The sections were then incubated with the indicated primary antibodies at 4 °C overnight. On the second day, after washing with PBS, the sections were incubated with fluorescein‐labeled secondary antibodies for 1 h at room temperature away from light. Images were captured using a confocal imaging system (Nikon Eclipse Ni‐E). The following antibodies were used: anti‐Ki67 (Abcam, #ab279653), anti‐CD105 (Abcam, #ab221675), anti‐KAT2A (Santa Cruz, #sc‐365321), anti‐Osteocalcin (OCN) (Abcam, # ab93876), and anti‐GFP (CST, #2955). The following secondary antibodies were used: Alexa Fluor 488‐conjugated goat anti‐mouse IgG secondary antibody (Invitrogen, #A‐11001), Alexa Fluor® 488‐conjugated goat anti‐rabbit IgG secondary antibody (Invitrogen, #A‐11008), Alexa Fluor™ 555‐conjugated goat anti‐mouse IgG secondary antibody (Invitrogen, #A‐21422), and Alexa Fluor 555‐conjugated goat anti‐rabbit IgG secondary antibody (Invitrogen, #A‐21428).
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7

Multiplexed Detection of Cytotoxic T-Cell Markers

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RNAscope (Advanced Cell Diagnostics) in situ hybridization and immunofluorescence staining were performed on 4 μm FFPE sections from cystectomy specimens with existing scRNA-seq and TCR-seq data. Tissues were pre-treated with target retrieval reagents and protease to improve target recovery based on guidelines provided in the RNAscope Multiplex Fluorescent Reagent Kit v2 Assay protocol. Probes for human GZMB and GZMK mRNA (ACD) were incubated at 1:700 dilution for 2 hr 40 min. The probe was then hybridized with Opal 7-Color Manual IHC Kit (PerkinElmer), with detection of GZMB and GZMK using Opal 620 and Opal 540 respectively. Samples were then immunofluorescence stained for human CD4 (Cell Marque) which was detected using Alexa Fluor 555-conjugated goat anti-rabbit IgG secondary antibody (Invitrogen). Tissues were counterstained with DAPI. Slides were imaged using a TCS SP8 X white light laser inverted confocal microscope (Leica Microsystems). No staining was seen with negative control probes (for RNAscope) or with secondary antibody alone (for immunofluorescence) for tumor tissue from cystectomy specimens (shown in Figure 4F) or healthy tonsil tissue (data not shown).
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