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Luria bertani

Manufactured by HiMedia
Sourced in India

Luria Bertani (LB) is a widely used growth medium for culturing bacteria. It provides the necessary nutrients and growth factors for the proliferation of various bacterial species. LB is a complex medium composed of tryptone, yeast extract, and sodium chloride, which support the general nutritional requirements of bacteria. This medium is frequently utilized in laboratory settings for bacterial cultivation, genetic manipulation, and other microbiological applications.

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13 protocols using luria bertani

1

Bacterial Strain Cultivation and Maintenance

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Luria Bertani (LB), and nutrient medium (NM) and constituents of growth media were purchased from HI Media. E. coli ATCC 25922 and S. aureus ATCC 25923 are type strains, which were taken from culture collection of department of Microbiology, while B. subtilis AST5-2, P. aeruginosa AL2-14B32 (link) and K. pneumoniae AWD533 (link), were isolated in an unrelated work, and identified by 16S rDNA sequence analysis. P. aeruginosa AL2-14b was plant endophyte while B. subtilis AST5-2 and K. pneumoniae AWD5 were isolated from soil. The bacterial strains were grown on LB or NM as per the requirements, and stored on nutrient agar (NA) slants at −20 °C. The cultures were revived on LB broth and sub-cultured after regular intervals.
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2

Heterologous expression of Lip11 lipase

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Restriction enzymes were purchased from New England Biolabs (NEB), USA. Taq polymerase and T4 DNA ligase were purchased from Bangalore Genei, India. Gel extraction kit and plasmid isolation kit were purchased from Qiagen, India. Recombinant yeast strain P. pastoris X-33 harbouring Lip11 gene from Yarrowia lipolytica was taken from the laboratory culture collection. This strain has been submitted to Microbial Type Culture Collection (MTCC) with MTCC number 9517. Zeocine was from Invitrogen. The triacylglycerides, p-np esters used in the experiments were procured from Sigma Aldrich. Luria bertani, tryptone, yeast extract, yeast nitrogen base and methanol were purchased from Hi-Media. Sodium chloride was taken from Sisco Research Laboratories Pvt. Ltd. India (SRL). Glycosylation kit was procured from G Bioscience (USA).
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3

Fungal Infection Assay in Rice

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In this study, an Indian strain of M. oryzae, i.e., B157 (international race IC9) isolated from Hyderabad, and its cytoplasmic GFP-expressing transformant (M. oryzaeGFP) were grown on yeast extract glucose (YEG) media (Saha et al., 2020 (link)). The blast-susceptible indica rice cultivar- C0-43, was grown at 27°C under a 16:8 light/dark photoperiod. The binary vector pCAMBIA1302 was streaked onto Luria Bertani (Himedia, Mumbai, India) agar plates supplemented with 50 mg/L Kanamycin (Himedia, Mumbai, India) and incubated overnight at 37°C. Fungal growth assays were performed on a complete medium (CM) supplemented with or without dsRNA, at 28°C for 7 days. For conidiation, the fungi were grown in dark on YEG plates for 8–10 days. The fungal biomass was then scraped on 10 days after inoculation and homogenized into uniform slurry by vortexing. Spores were separated from the mycelial debris by filtering the slurry through sterile MiraCloth (Calbiochem, Darmstadt, Germany), and then centrifuged at 7,000 rpm for 7 min. The conidia were visualized and counted under a microscope using a hemocytometer (Neubauer, Marienfeld, Germany). The length and breadth of conidia were measured keeping a 20-μm scale reference using an built-in microscope camera. Microscopic examination of at least 50 conidia per replicate was done in at least three independent experiments.
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4

Bacillus and Escherichia coli Culture Protocols

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A list of strains with their genotype description is provided in Table 1. B. subtilis and E. coli cultures were grown in Luria Bertani (Hi Media Laboratories Pvt. Ltd., Mumbai, India) medium at 37°C and shaking at 200 rpm. Bacillus subtilis was also grown in Tris base medium (TSS) [13 ]. Unless stated, 10 g/L of glucose was used for growth studies. When required, ampicillin (100 μg/mL) and chloramphenicol (25 μg/mL) were used for selection of E. coli strains (Sigma Chemical Co., USA). Chloramphenicol (5 μg/mL) was used for selection of Bacillus strains.
Unless otherwise mentioned, all chemicals were purchased from Sisco Research Laboratory Pvt. Ltd., Mumbai, India. Standard cloning protocols were followed in Escherichia coli and Bacillus subtilis, as described in Sambrook et al., 1989, and Harwood and Cutting, 1990, respectively.
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5

Culturing Staphylococcus epidermidis RP62A

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Staphylococcus epidermidis RP62A (ATCC 35984) was routinely grown in Luria-Bertani (LB; HiMedia, India) and was maintained in LB with 30% glycerol at -80°C. α-MG was purchased from Sigma-Aldrich (Catalog No.: M3824) and stock solution of 1 mg/mL was prepared in methanol.
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6

Pseudomonas aeruginosa Aptamer Synthesis

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Bacterial strain, Pseudomonas aeruginosa (ATCC 10145) was used as the target organism. Selected aptamer sequences were synthesised by Integrated DNA Technologies company. Luria–Bertani (LB) media, Nutrient Agar (NA) and Phosphate-Buffered Saline (PBS) were purchased from the HI-MEDIA brand.
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7

Biosynthesis of Selenium Nanoparticles

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A loop-full of culture of Acinetobacter sp. SW30 isolated from activated sewage sludge was inoculated in 200 mL Luria–Bertani (HiMedia, Mumbai, India) broth and incubated at 30°C, 200 rpm for 24 h.12 Cells were harvested by centrifugation (10,000 rpm for 10 min at 10°C) and washed thrice with sterile distilled water (D/W). Cell pellet was suspended in sterile D/W and challenged with sodium selenite (Na2SeO3; SD Fine Chemicals, Mumbai, India) so as to get a final concentration of 1 mM and incubated at 30°C, 180 rpm. Synthesis of SeNPs was observed preliminarily by change in color of the suspension. In all the experiments, after every 24 h, 200 µL aliquots were withdrawn; UV–Visible (UV–Vis) spectra were recorded from 200 to 800 nm on Spectra Max M2 Multimode Microplate Reader (Molecular Devices LLC, Sunnyvale, CA, USA) and those showing maximum synthesis of SeNPs were observed under transmission electron microscopy (TEM).
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8

Synthesis and Characterization of Chitosan-Based Biomaterials

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All reagents were of analytical grade (AR) and supplied by Fischer Scientific. Zinc chloride, sodium hydroxide, chitosan, ferric chloride, sodium lauryl sulphate (SLS), pyrrole and methanol were used as received. Agarose, low melting point Agarose (LMPA), Triton X-100, Trypan blue and MTT were purchased from Sigma Aldrich (St. Louis, MO). Tissue culture-grade plastic-ware was purchased from Eppendorf, Hamburg, Germany. Tissues and cells were maintained in Roswell Park Memorial Institute (RPMI)-1640 culture medium supplemented with 10% fetal bovine serum (FBS) (Gibco, life technologies), and 0.5% antibiotic antimycotic solution (Sigma-Aldrich Co, St Louis, MO, USA) at 37 °C in a humidified incubator maintaining 5% CO2. Bacterial culture media Luria Bertani, agar and brain heart infusion were procured from Himedia Laboratories Pvt. Ltd. All other chemicals were of analytical grade and used without further purification.
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9

Antimicrobial Activity of EPS400

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Antimicrobial activity of EPS400 against bacterial (Bacillus substilis NCDC70, Micrococcus luteus NCDC174, Pseudomonas aeruginosa NCDC105, Escherichia coli NCDC135, Staphylococcus aureus NCDC100), and fungal species (Rhodotorula glutinis NCDC51, Aspergillus niger NCDC55, Candida butyri NCDC280 and Penicillum camemberti NCDC56) was determined using agar well diffusion assay [19 (link)] with some modification. Briefly, the overnight incubated indicator microorganisms were diluted to 106 to 107 cfu/mL and spread on a petri dish containing Luria–Bertani (Himedia, India) or potato dextrose agar (Himedia, India). Afterwards, 200 μL of EPS400 solution was poured into the wells (7 mm in diameter) created on the solid agar. The plates were incubated for 24 h and the inhibition zones were measured. Ampicillin (100 g/mL) (Himedia, India) served as a positive control.
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10

Bacterial Hosts for Transient and Stable Plant Transformation

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Agrobacterium tumefaciens strain LBA4404 was used for rice transient transformation assays and for generation of Arabidopsis transgenic plants. The LB4404 strain derivatives carrying different plant expression vectors (Additional file 9: Table S3) were grown overnight at 28 °C in Luria Bertani (LB; HiMedia) broth. Xoo strain BXO43 (our laboratory wild type) was grown and maintained on PSA (peptone 10 g L− 1, sucrose 10 g L− 1, agar 12 g L− 1) medium with rifampicin (25 mgL-1). Pseudomonas syringae pv. tomato (Pst) DC3000 was maintained on King’s basal agar medium (HiMedia) and for plant inoculations the culture was grown overnight at 28 °C in LB broth with rifampicin (25 mgL-1).
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