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6 protocols using collagenase 3

1

Human Nasal Polyp Organoid Culture

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Human nasal polyp tissues were obtained from resections performed at the southern hospital of southern medical university. All patients provided informed consent. Samples were procured and the study was conducted under Institutional Review Board approval before tissue acquisition.
The tissue samples were minced and incubated with digestion buffer consisting of advanced DMEM/F12 supplemented with 0.125 mg/mL dispase II (Wako, Richmond, VA, USA), 0.1 mg/mL DNaseI (MilliporeSigma, Burlington, MA, USA), 0.125 mg/ml collagenase III (Gibco, Carlsbad, CA, USA), 10% Fetal Bovine Serum (Gibco, Australia) and 1% penicillin-streptomycin at 37 °C for 1 h on the shaker. Subsequently, supernatants were filtered through the 100 μm cell strainer (JET BIOFIL, Guangzhou, China), and the suspension was collected by centrifugation at 200g for 5 min. The pellets were resuspended in the culture media and mixed with Matrigel (Corning, Corning, NY, USA). The cell-Matrigel mix was seeded in a 24-well plate and incubated with an Accurate organoids’ expansion medium at 37 °C and 5% CO2. The culture medium was changed every two to three days.
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2

Single-cell isolation of mouse embryos

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Dissociation of mouse embryos into single cells was performed using enzymatic digestion with 0.05% Trypsin (Gibco), DNAse (50 U/ml; Sigma) and Collagenase I & II (100 U/ml; Gibco), followed by filtration through a 100 μM and then a 40 μM cell strainer before centrifugation at 448 g (2000 rpm) for 5 mins at 4°C. The cells were resuspended in 5% fetal bovine serum and 4 mM EDTA in Leibovitz's L-15 medium for cell sorting using FACSAria flow cytometer (BD Biosciences) and collected into a 1.5 ml microcentrifuge tube containing 20% FBS buffer. Gating was performed using E12.5 WT embryos. Sorted cells were spun at 1400 g for 10 min at 4°C, resuspended in Trizol (Invitrogen) and incubated for 5 min at room temperature (RT). RNA was extracted using Trizol followed by column purification with the QIAGEN RNeasy Micro kit, including on-column DNAse treatment, RNA samples were quantified and checked for their integrity using Agilent RNA Pico 6000 Chip and Agilent 2100 Bioanalyzer software according to the manufacturer's protocol. RNA was stored at –80°C until further use.
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3

Embryonic Mouse Tissue Dissociation

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The mouse embryos were harvested in ice-cold Leibovitz L-15 medium (Gibco) at E12.5. Embryos expressing EGFP in the Bapx1-expression domains were identified under a fluorescent dissection microscope (Leica). The embryos were dissected to separate out the vertebral column, spleen, gut, hindlimb and forelimb, which were then separately dissociated into single cells with a solution comprising of 100U/ml Collagenase I & II, 50U/ml DNAse and 0.05% Trypsin (Invitrogen). The cells were filtered serially through a 100uM and 40uM cell strainer, and centrifuged at 2000 rpm for 5 min. The cell pellet was resuspended in 5% FBS, 4 mM EDTA in Leibovitz L-15 medium for cell sorting using FACSAria (BD Biosciences).
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4

Isolation of Spleen, Tumor, and TDLN Cells

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The spleen, tumor or tumor-draining lymph node (TDLN) cell isolation procedure was based on our previously described procedure55 (link). Tissues were dissected from freshly killed mice and trimmed of fat and connective tissue. Small cuts into the capsules were made with a pair of fine scissors, and the fragments were incubated in 1 mg/ml collagenase III (Gibco-Invitrogen) in RPMI 1640 medium at 37 °C for 15 min with gentle agitation using a Pasteur pipette every 5 min. Cells recovered by centrifugation were resuspended in FACS staining buffer (BD Pharmingen) and then passed through a 100-μm mesh strainer before counting and staining.
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5

Establishing a Breast Carcinoma Cell Line

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Cell culture materials were from Lonza, (Basel, CH) unless otherwise specified.
The pBC cell line was generated from a specimen of human invasive ductal breast carcinoma, derived by the surgeons of the Breast Unit at the University Hospital of Pisa. This breast carcinoma was previously shown to contain MMTV-env sequences using nested PCR [4 (link)]. The specimen was dissected under sterile conditions by an experienced pathologist and only tumoral pieces were selected. Tissue fragments were carefully minced into 2-3 mm cubes in a small volume of growth medium and washed with a mixture of PBS (Phosphate Buffered Saline), penicillin/streptomycin and fungizone.
The tissue fragments were incubated overnight at 37°C under 5% CO2 with DMEM F12, 10% FBS (Fetal Bovine Serum) and 10 mg collagenase III (Invitrogen, Life Technologies). On the following day, the tissue fragments were centrifuged at 1200 rpm for 5 minutes and plated in a T25 flask with growth medium containing: DMEM F12, 1% penicillin/streptomycin, 1% hydrocortisone (Sigma), 1% fungizone, 5% FBS, 20 ng/ml hEGF (Human Epidermal Growth Factor, Miltenyi Biotec), 2% B27, 25ul Coleric Toxin (Reagent Proteins), 2ml Bovine Pituitary Extract (Invitrogen, Life Technologies).
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6

Isolation and Analysis of Immune Cells from Spleen, Tumor, and Lymph Nodes

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The spleen, tumor or tumor-draining lymph node (TDLN) cell isolation procedure was based on our previously described protocol55 (link). Tissues were cut into fragments and then incubated in 1 mg/ml collagenase III (Gibco-Invitrogen) in RPMI 1640 at 37 °C for 15 min. Flow cytometry staining was performed using fluorescence-conjugated anti–mouse antibodies targeting CD4, CD8a, CD69, CD25, IFN-γ, IL17A, CD11b and CD11c (BD Pharmingen). Cells were also incubated with goat anti-Nrp-1 (R&D Systems) and rat anti-TGF-β1 (Biolegend) followed by an Alex Fluor 647-conjugated anti-goat antibody (BD Pharmingen) or Alex Fluor 488-conjugated anti-rat antibody (BD Pharmingen). Intracellular staining was performed using a Foxp3 staining kit and fixation/permeabilization buffer (eBioscience). Samples were obtained using a FACSCalibur equipped with Cell Quest software (BD Biosciences). The cells were gated for lymphocytes based on the forward and side scatter profiles. All data were analyzed using Tree Star FlowJo software.
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