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2 protocols using 2 deoxyguanosine dg

1

Quantifying Oxidative DNA Damage

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Methanol (MeOH), ethanol, 2-propanol, and tris-hydrochloride (Tris-HCl) were from either Macron Fine Chemicals or J.T. Baker (Center Valley, PA, USA). Ammonium acetate (AA), formic acid (FA), dimethyl sulfoxide (DMSO), sodium iodide (NaI), deferoxamine mesylate (DFO), nuclease P1, snake venom phosphodiesterase I (Crotalus atrox), formaldehyde, CLB, CT-DNA, and 2′-deoxyguanosine (dG) were from Sigma-Aldrich (St. Louis, MO, USA). Alkaline phosphatase and dephosphorylation buffer were from Roche (Grenzacherstrasse, Basel, Switzerland). [15N5]-8-Oxo-7,8-dihydro-2′-deoxyguanosine ([15N5]-8-oxodG) was from Cambridge Isotope Laboratories (Tewksbury, MA, USA). [d4]-N6-(2-Hydroxyethyl)-2′-deoxyadenosine ([d4]-N6-2HEdA) was from Toronto Research Chemicals (Ontario, Canada). N6-Benzoyl-8-hydroxy-2′-deoxyadenosine (N6-Bz-8-oxodA) was from Carbosynth (Compton, UK).
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2

Synthesis and Quantification of Pyrrolizidine Alkaloid-DNA Adducts

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N-acetylcysteine, calf thymus DNA (sodium salt, Type I), nuclease P1, micrococcal nuclease, spleen phosphodiesterase, NADPH, 2′-deoxyguanosine (dG), and 2′-deoxyadenosine (dA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Dimethylformamide, acetonitrile, potassium carbonate, chloroform, diethyl ether, and phosphate buffered saline were obtained from Fisher Scientific (Pittsburg, PA, USA). AX 1-X8 anion exchange resin was purchased from Bio-Rad (Hercules, CA, USA). All solvents used were high performance liquid chromatography (HPLC) grade.
Dehydromonocrotaline was synthesized by dehydrogenation of monocrotaline in chloroform with o-chloranil, as previously described [19 (link)]. DHP was obtained from the metabolism of riddelliine by rat liver microsomes [27 ]. DHP-dG-1, DHP-dG-2, DHP-dG-3, DHP-dG-4, DHP-dA-1, DHP-dA-2, DHP-dA-3, and DHP-dA-4 adducts were synthesized as previously described [10 (link),19 (link)]. Isotopically labeled DHP-[15N5]dG and DHP-[15N5, 13C10] dA adducts, used as internal standards for quantitation of DHP-dG and DHP-dA adducts by liquid chromatographytandem mass spectrometry (LC/MS/MS), were synthesized as described previously [8 (link),10 (link)].
Male human liver microsomes and male Fischer 344 rat liver microsomes were purchased from Bioreclamation IVT (Baltimore, MD, USA). DNA concentrations were determined spectrophotometrically.
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