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Zen digital imaging

Manufactured by Zeiss
Sourced in Germany

ZEISS ZEN Digital Imaging is a software solution for microscope-based digital imaging. It provides a user-friendly interface for capturing, processing, and analyzing digital images from ZEISS microscopes. The core function of the software is to enable seamless integration between ZEISS hardware and digital imaging workflows.

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6 protocols using zen digital imaging

1

Microscopic Imaging of Fungal Morphology

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To investigate vegetative hyphae and sexual structures, S. macrospora strains were grown on solid SWG medium covered with a piece of cellophane (0.5 cm × 0.5 cm) over 2 to 9 days and documented with an AxioImage M1 microscope (Zeiss, Jena, Germany) using differential-interference contrast (DIC) or a VHX-500F Digital Microscope (Keyence, Neu-Isenburg, Germany). Images were captured with a Photometrix CoolSNAP HQ camera (Roper Scientific, Photometrics, Tucson, AZ, USA). Image processing was done using ZEISS ZEN Digital Imaging (version 2.3; Zeiss, Jena, Germany) and the Affinity Publisher software (version 1.9.2.1035, Serif (Europe) Ltd., Nottingham, UK, https://affinity.serif.com/de/publisher/; accessed on 1 March 2021).
For fluorescence microscopic analyses, S. macrospora strains were grown on selective BMM medium on top of cellophane sheets or on BMM-covered glass slides for 24 h at 27 °C. For the detection of the EGFP signal Chroma filter set 49002 (exciter ET470/40x, ET525/50m, beamsplitter T495lpxr) and for TagRFP-T/tdTomato Chroma filter set 49005 (exciter ET545/30x, emitter ET620/60m and beamsplitter T570LP) was used.
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2

Microscopic Investigation of S. macrospora Sexual Structures

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For the investigation of sexual structures and hyphae, S. macrospora strains were grown for two to ten days on SWG covered glass slides and documented with a VHX-500F Digital Microscope (Keyence, Germany) or AxioImager M1 microscope (Zeiss, Jena, Germany) with differential interference-contrast (DIC). Images were captured using a Photometrix CoolSNAP HQ camera (Roper Scientific, Photometrics, Tucson, AZ, USA). Image processing was done using ZEISS ZEN Digital Imaging (version 2.3; Zeiss).
For fluorescence microscopic analysis, S. macrospora strains were grown on solid medium on top of a piece of cellophane (2 cm × 2 cm) in petri dishes at 27 °C for the indicated hours or days. For the detection of the eGFP signal chroma filter set 49002 and for DsRED/TagRFP-T chroma filter set 49005 (exciter ET470/40x, ET545/30x, emitter ET525/50 m, ET620/60 m and beamsplitter T495lpxr, T570lp) were used.
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3

Microscopic Imaging of Chlamydomonas CgAtg8

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Microscopic documentation was performed with the AxioImager M1 microscope (Zeiss, Jena, Germany) with differential interference contrast (DIC). Image capturing was performed with a Photometrix CoolSNAP HQ camera (Roper Scientific, Photometrics, Tucson, AZ, USA). Images were processed using ZEISS ZEN Digital Imaging (version 2.3; Zeiss). For visualization of expressed green-fluorescent CgAtg8, Chroma filter set 49002 (exciter ET470/40x, ET525/50m, beamsplitter T495lpxr) was used. For each experiment, at least three biological replicates were analyzed.
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4

Immunofluorescence Analysis of Drosophila Testes

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Testes from adult flies were dissected and fixed in a 4% paraformaldehyde solution for 30 minutes. Samples were washed 15 minutes twice with 0.1% Triton X-100 in PBS (PBS-T) with 0.3% sodium deoxycholate, then washed once for 10 minutes with PBS-T. Testes were blocked with a 3% bovine serum albumin (BSA) solution in PBS-T and incubated overnight at 4°C in primary antibodies diluted in the block solution. Samples were then washed for 10 minutes three times with PBS-T, incubated in Alexa-conjugated secondary antibody (1:500, Invitrogen) with 3% BSA in PBS-T, washed 10 minutes three times, and mounted in vectashield with DAPI (Vector Labs). Primary antibodies and concentrations used are listed in the key resources table. Samples were imaged with a Carl Zeiss LSM 780 or 880 Confocal microscope, or Axio Vert.A1 inverted light microscope with a 40x water-immersion or 63x oil-immersion objective. Digital images were processed using ZEN digital imaging (version 4.1, Zeiss), Image J (v2.0.0, Wayne Rasband, National Institute of Health, imagej.nih.gov/ij">http://imagej.nih.gov/ij), and Adobe Illustrator software.
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5

Histological Verification of VTA and PPN

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All animals were killed two hours after the end of Es-VTA (pentobarbital, 0.9% saline, phosphate-buffered 4% formaldehyde).
To determine the placement of the electrode in the VTA and cannula in the PPN, Nissl staining in select sections was performed from 4.52 to 5.60 mm and from 7.30 to 8.30 mm sections (the thickness of each section was 20 µm). The sections were mounted on gelatin-coated slides, stained with Cresyl violet perchlorate (Sigma-Aldrich, St. Louis, MO, USA), and dehydrated, and coverslips were placed on top using DPX for histology (Sigma-Aldrich, St. Louis, MO, USA). Micro photos of the sections were taken with simultaneous application of templates derived from the brain atlas of rats [28 ] using a magnifier (Stemi 508; Zeiss, Oberkochen, Germany) and camera (Axiocam 105 color; Zeiss) with integrated software (Zen Digital Imaging; Zeiss, Oberkochen, Germany).
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6

Scratch Wound Assay and Transwell Migration Assay for β1-AA Effects

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For the scratch wound assay, 2×10
5 cells/well (three replicates per group) were plated into a 12-well plate and incubated to reach 80% confluence. The monolayer was scratched using a tip and washed with serum-free medium to remove detached cells. Then the cells were cultured in complete medium supplemented with different β
1-AA concentrations (10
–6 M, 10
–7 M, and 10
–8 M) or fresh medium alone. RAW264.7 cells were photographed at 0 h and 24 h post-wounding with an invert microscope (Axio Vert A1; ZEISS, Oberkochen, Germany).
For the transwell assay, 1×10
4 cells/well (three replicates per group) were suspended in low serum (5% FBS) medium and seeded into the upper chamber of transwell 24-well plates (Corning, Corning, USA) with 8 μm pore filters. Then the lower chamber was added with complete medium (containing 10% FBS) supplemented with different β
1-AA concentrations (10
–6  M, 10
–7  M, and 10
–8  M). After 12 h, the cells attached on the upper surface of the filter membranes were cleaned and migrated cells of the lower surface were stained with 0.5% crystal violet for several minutes. The level of migration was observed under a light microscope with ZEN Digital Imaging (ZEISS).
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