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Nupage 10 bis tris protein gel

Manufactured by Thermo Fisher Scientific
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The NuPAGE™ 10% Bis–Tris Protein Gels are pre-cast polyacrylamide gels designed for the separation and analysis of proteins. They provide a consistent and reliable platform for protein electrophoresis.

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14 protocols using nupage 10 bis tris protein gel

1

Western Blot Analysis of PON Proteins

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Anti-PON1, PON2, and PON3 antibodies were from Abcam (Cambridge, MA, USA). Anti β-actin antibody was from Sigma-Aldrich (St. Louis, MO, USA), while 10× Tris-buffered saline, Tween-20, Coomassie Brilliant Blue R-250 were from Bio-Rad Laboratories (Hercules, CA, USA). XCell II™ Blot Module, XCell SureLock™ Electrophoresis Cell, NuPAGE® MOPS SDS Running Buffer 20×, NuPAGE® LDS Sample Buffer 4×, NuPAGE® Antioxidant, NuPAGE® Sample Reducing Agent 10× and NuPAGE® 10% Bis-Tris Protein Gels were from Life Technologies (Carlsbad, CA, USA). Immobilon®-P Transfer Membrane was from Millipore Corporation (Billerica, MA, USA). Restore™ Western Blot Stripping Buffer, PageRuler™ Prestained Protein Ladder, SuperSignal® West Pico Chemiluminescent Substrate, SuperScript® III Reverse Transcriptase and TaqMan® Gene Expression Assays were from Thermo-Fisher Scientific (Waltham, MA, USA). Antirabbit IgG HRP-linked antibody and Cell Lysis Buffer 10× were from Cell Signaling Technology (Danvers, MA, USA). HRP Goat Anti-Mouse Ig was from BD Biosciences (San Jose, CA, USA). RNeasy® Mini Kit was purchased from Qiagen (Hilden, Germany). TaqMan® Gene Expression Master Mix was from Applied Biosystems (Foster City, CA, USA).
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2

Tau Isoform Identification and Quantification

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For dephosphorylation experiments, cells or tissues were processed as described above. For experiments that did not require dephosphorylation, cells or tissues were lysed in RIPA lysis buffer (Merck Millipore, Fontenay sous Bois, France) containing 2 mM orthovanadate (Merck-Sigma, Molsheim, France), phosphatase inhibitor cocktail II (Merck-Sigma) and a protease inhibitors cocktail (Merck-Sigma). Western blots were performed as we previously described using NuPAGE™ 10% Bis-Tris Protein Gels (Life Technologies). The primary anti-tau antibodies used are listed in Table 1. β-Actin antibodies (Abcam, France, 1:1,000 dilution) were used as loading control. Tau ladder (six human tau recombinant isoforms, Sigma-Merck) was used to identify tau isoforms in NCI-H716 cells. For quantification, the relevant immunoreactive bands were quantified with laser-scanning densitometry and analyzed with Image Lab software (Biorad, Marnes-la-Coquette, France) or ImageJ software (NIH; version 1.51). To allow comparison between different films, the density of the bands was expressed as a percentage of the average of controls. pThr205 tau immunoreactive bands were measured, normalized to the optical densities of total tau, and expressed as percentage of controls.
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3

Luciferase Expression in Transfected MSCs

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Forty‐eight hours after BMSC and AMSC transfection with LF‐3000 complexed with pEGFP‐Luc, as described above, media was removed and cells were washed once with 1× PBS before dissociating with 0.25% Trypsin–EDTA and lysing in NP‐40 buffer. Protein concentration was determined with the Pierce bicinchoninic acid protein colorimetric assay. Samples were denatured and reduced in NuPage® LDS sample buffer 4× and sample reducing agent (Invitrogen) at 70°C. Equal masses of protein were resolved on NuPAGE™ 10% Bis–Tris Protein Gels run in XCell SureLock™ Mini‐Cell Electrophoresis System (Thermo Fisher Scientific). Protein was transferred to Immobilon‐FL polyvinylidene fluoride membranes and total protein was stained with REVERT™ total protein stain (Li‐Cor, Lincoln, NE) following the manufacturer's protocol. Membranes were washed, blocked, and probed for luciferase with rabbit polyclonal primary antibody (1:1000; Sigma‐Aldrich) and goat antirabbit IgG (H + L) 800 CW secondary antibody (1:10,000; Li‐Cor). Visualization and quantification was carried out with Odyssey CLx Scanner and software (Li‐Cor) normalizing to total protein.
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4

Luciferase Expression in Transfected MSCs

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Forty-eight hours after BMSC and AMSC transfection with LF-3000 complexed with pEGFP-Luc, as described above, media was removed and cells were washed once with 1X PBS before dissociating with 0.25% Tryspsin-EDTA and lysing in NP-40 buffer. Protein concentration was determined with Pierce BCA protein colorimetric assay. Samples were denatured and reduced in NuPage® LDS Sample buffer 4X and Sample Reducing Agent (Invitrogen) at 70°C. Equal masses of protein were resolved on NuPAGE™ 10% Bis-Tris Protein Gels run in XCell SureLock™ Mini-Cell Electrophoresis System (Thermo). Protein was transferred to Immobilon-FL polyvinylidene fluoride (PVDF) membranes and total protein was stained with REVERT™ Total Protein Stain (Li-Cor, Lincoln, NE) following the manufacturer’s protocol. Membranes were washed, blocked, and probed for luciferase with rabbit polyclonal primary antibody (1:1000, Sigma) and goat anti-rabbit IgG (H+L) 800 CW secondary antibody (1:10,000, Li-Cor). Visualization and quantification was carried out with Odyssey CLx Scanner and software (Li-Cor) normalizing to total protein.
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5

Quantitative Western Blotting for Opioid Receptors

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Western blotting was performed essentially as previously described (Blackwood et al., 2018 (link)). In brief, soluble protein lysates were prepared in solutions that contained 1x NuPage LDS Sample Buffer (Thermo Fisher Scientific, Waltham, MA, United States), and 1% β-Mercaptoethanol (Sigma, St. Louis, MO, United States). Samples were then boiled and resolved using NuPage 10% Bis-Tris Protein Gels (Thermo Fisher Scientific, Waltham, MA, United States). Proteins were electrophoretically transferred onto Trans-Blot® TurboTM Midi Nitrocellulose membranes using the Trans-Blot® TurboTM system (Bio-Rad, Hercules, CA, United States). Primary rabbit antibodies used were anti-OPRM1 (1:5000, ab17934), anti-OPRK1 (1:10000, ab183825), anti-OPRD1 (1:1000, ab176324), and anti-Cyclophilin B (CYPB) (1:10000, ab16045) purchased from Abcam (Cambridge, MA, United States). Secondary antibodies used were goat anti-rabbit (1:500, Sc-1404) conjugated HRP purchased from Santa Cruz Biotechnology (Dallas, TX, United States). Following secondary antibody incubation, ECL clarity (Bio-Rad, Hercules, CA, United States) was used to detect gel bands on ChemiDoc Touch Imaging System (Bio-Rad, Hercules, CA, United States), and intensities were quantified with Image Lab version 6.0 (Bio-Rad, Hercules, CA, United States) software.
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6

Immunoblotting Workflow for Protein Detection

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Immunoblotting (IB) was performed as we previously described [25] (link), [26] (link), [27] (link), [28] (link). Briefly, the Blot Mini Gel Tank and Blot Module Set (Thermo) with precast polyacrylamide gels of NuPAGE 10% Bis−Tris protein gels (1.5 mm × 10 wells, Thermo) were used. Primary antibodies included rabbit anti-ISG15 mAb (Sinobiological, Beijing, China; 1:2000), rabbit anti-syntenin mAb (Abcam, Shanghai, China; 1:1000), rabbit anti-TSG101 mAb (Merck, Guangzhou, China; 1:2000), rabbit anti-CD9 pAb (Abcam; 1:2000), and rabbit anti-GRP78/BIP pAb (Proteintech, Wuhan, China; 1:2000). HRP-conjugated anti-rabbit IgG mAb (CST; 1:20000) was used as the secondary antibody.
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7

Western Blot Analysis of p53

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Total protein was isolated using RIPA buffer, followed by a 15-min incubation on ice, and pelleting of and centrifugation to remove insoluble debris. Protein lysate samples were run at 180 V on NuPAGE 10% Bis–Tris protein gels from Invitrogen. Samples were blotted onto 0.2 μm nitrocellulose membrane and probed with p53 (clone DO1, BD Biosciences, #554923) or GAPDH (Cell signaling #5174S) antibodies. Proteins were visualized with HRP-conjugated secondary antibodies and SuperSignal Chemiluminescent reagents (Thermo Scientific) and imaged on a BioRad Chemidoc imager.
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8

Protein Extraction and Analysis

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Cells were lysed in ice with RIPA buffer (150 mmol/l Tris–HCl pH 7.0, 150 mmol/l NaCl, 1% NP-40, 1% sodium deoxycholate, 0.1%SDS) containing with protease inhibitor cocktail (Roche, 4,693,159,001) for 30 min. The Bio-Rad protein assay was used to quantify the lysates. The protein samples were subjected to NuPAGE™ 10% Bis–Tris Protein Gels (Invitrogen, NP0302BOX) and probed with the indicated antibodies to visualize the protein levels using a ChemiScope 6000 Touch.
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9

Affinity Purification of Double-Tagged ERCC1 and XPF

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Flp-In™ T-REx™ 293 cell line (control) and the two derived cell lines were incubated with 1 μg/ml tetracycline for 48 h to induce double-tagged ERCC1 or XPF. Cell lysates were prepared in the lysis buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100) containing EDTA-free protease inhibitor cocktail (Roche), supplemented with imidazole (final 10 mM) (Sigma) and incubated with Ni-NTA agarose (Qiagen) for 1 h at 4°C. After washing with the lysis buffer containing 10 mM imidazole, bound fractions were eluted with 200 mM imidazole in the same buffer and incubated with anti-FLAG antibody agarose (Sigma) for 12 h at 4°C. The proteins bound to agarose were washed three times and eluted by incubating with the lysis buffer containing 150 μg/ml 3xFLAG peptide (Sigma) for 1 h at 4°C. The eluates were concentrated by chloroform-methanol extraction, dissolved in SDS sample buffer and fractionated by NuPAGE 10% Bis-Tris Protein Gels (Invitrogen). The mass spectrometry analysis was conducted in the UNC Michael Hooker Proteomics Center.
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10

SDS-PAGE Analysis of Protein Corona

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For SDS-PAGE, 1 µg of the hard protein corona samples were mixed with LDS reducing agent and sample buffer and incubated for 10 min at 70 °C. The samples were then applied on a NuPAGE 10% Bis-Tris protein gel (Thermo Fisher Scientific) and run for 1 h at 100 mV. The protein bands were stained using a SilverQuest Silver Staining Kit (Thermo Fisher Scientific) following the manufacturer instructions.
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