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67 protocols using epidermal growth factor (egf)

1

Isolation and culture of kidney tumor organoids

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Cells were isolated from the original tissue instantly after surgery
by dissociating the tissue into small pieces and treating it with
collagenase (40 units/mL) for 2–4 h. Benign and cancer cells
of the kidney of a clear cell renal cell carcinoma patient cells were
grown as organoids in F-medium [3:1 (v/v) of F-12 nutrient mixture
(Ham)–DMEM (Invitrogen), 5% FBS, 8.4 ng/mL cholera toxin (Sigma),
0.4 μg/mL hydrocortisone (Sigma), 10 ng/mL epidermal growth
factor (Corning), 24 μg/mL adenine (Sigma), 5 μg/mL insulin
(Sigma), 10 μM ROCK inhibitor (Y-27632, Enzo Life Sciences,
Lausen, Switzerland), and 1% penicillin-streptomycin with 10% Matrigel
(Corning). The bladder tumor-derived organoids were grown in hepatocyte
calcium medium (Corning)49 (link) supplemented
with 5% CSFBS (Thermo Fisher Scientific), 10 μM Y-27632 RHO
inhibitor (Sigma), 10 ng/mL epidermal growth factor (Corning), 1%
GlutaMAX (Gibco), 1% penicillin-streptomycin, and 10% Matrigel. A
total of 6 × 106 cells were collected by centrifugation,
washed in PBS to remove Matrigel, and snap frozen before analyses.
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2

Microfluidic Gradient Generation for Cell Signaling

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The flows into the two side channels were provided by two 10 mL syringes (Cat. #: 303134, Becton Dickinson, Franklin Lakes, NJ, USA) pumped with a syringe pump (KDS230, KD Scientific, Holliston, MA) through a medical grade tubing (Cat. #: AY202431-CP, Cole-Parmer, Vernon Hills, IL). All fluids from the syringes passed through a 0.2 μm filter (Cat. #: MS-3301, Pall Corporation, Port Washington, NY) before going into the inlets of the device to prevent air bubbles from entering the microfluidic channels. L-15 medium supplemented with 2.5% FBS was pumped through the sink channels, and the same medium supplemented with 8.33 nM EGF (Cat #: 354052, Corning, Lowell, MA, USA) was pumped through the source channels at a flow rate of 1 μL/min to generate the EGF gradient. For control, both the sink channel and the source channel were pumped with L-15 medium supplemented with 2.5% FBS.
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3

EPHB4 Inhibitor Treatment of Organoid Cultures

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NCI-H660 cells (ATCC) were seeded at 5000 cells/well density in ultra-low attachment 96-well plates (Corning) and cultured in Hepatocyte growth media (Corning) supplemented with 10 ng/ml epidermal growth factor (Corning), 5% heat inactivated charcoal stripped FBS, 1X Glutamax (Gibco), 5% Matrigel (BD Biosciences), 10 µM ROCK inhibitor (Y-27632, STEMCELL Technologies), and 1X Gentamicin/Amphotericin (Lonza), as described previously55 (link). At day 8, organoids were treated with NVP-BHG 712 (EPHB4i) from Selleck Chemicals or DMSO (Veh.), and viability was assessed at day 15 as per manufacturer’s protocol (Cell Titer Glo-3D viability assay, Promega).
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4

Isolation and Culture of Lacrimal Gland Acinar Cells

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Inferior lacrimal glands were removed aseptically and finely minced. Cell isolation was carried out as previously described [36 (link)]. Briefly, the tissue was enzymatically digested by collagenase (350 U/ml; Worthington Biochemical Corp, Lakewood, NJ), DNase I (40 U/ml; Roche) and hyaluronidase (300 U/ml; Sigma-Aldrich) for 45 min at 37 °C, and the digests were filtered through a 100 μm cell strainer and then centrifuged at 200g for 5 min. Cells were resuspended in HepatoStim culture medium supplemented with epidermal growth factor (EGF; 5 ng/mL; Corning, Tewksbury, MA). The LGACs were seeded on Matrigel® (growth factor reduced, Corning) coated wells at a density of 5 × 105 cells/cm2, and incubated at 37 °C with 5% CO2.
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5

Alveolar and Tracheal Cell Differentiation

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For the alveolar cell differentiation, cells with 105 cells had seeded on the collagen I-coated 24 well plate. MCDB201 medium (Sigma-Aldrich) supplemented with 5% FBS, Insulin-Transferrin-Selenium (Gibco), 1X penicillin-streptomycin-amphotericin B solution (PSA from 100X stock, Biological Industries), and 25 ng/mL of epidermal growth factor (Corning) were replaced every two days. Cells had differentiated after 7-14 days of culture. For trachea epithelial cell differentiation, cells with 105 cells had seeded on the collagen I-coated 24-well transwell inserts with 0.4 μm pore (Corning). MCDB201 medium supplemented with 5% FBS, Insulin-Transferrin-Selenium, 1X PSA, 0.1 μg/mL of cholera toxin, 30 μg/mL of bovine pituitary extract (Gibco), and 25 ng/mL of epidermal growth factor. Medium in the transwell inserts with 0.4 μm pore and the lower chambers had replaced every two days. As cells reached 100% confluence, cells had maintained under the air-liquid interface by leaving the transwell inserts empty for 10-15 days.
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6

Oxidative Stress Evaluation in Cells

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DMEM/F12, penicillin-streptomycin, fetal bovine serum, TRIzol reagent, SYBR Green, and RIPA buffer were supplied from Thermo Fisher Scientific (Waltham, MA, USA). Epidermal growth factor, and ITS (the mixture of insulin, transferrin, and selenious acids) were obtained from Corning Incorporated (New York, NY, USA), dimethyl sulfoxide, and genistein (synthetic product, purity ≥ 98%) were provided by Sigma-Aldrich (St. Louis, MO, USA). ROS assay kit was obtained from Beyotime Biotechnology (Shanghai, China). The cell counting kit (CCK-8) was bought from Med Chem Expression (Princeton, NJ, USA). The malondialdehyde (MDA), glutathione peroxidase (GSH-Px), catalase (CAT), and superoxide dismutase (SOD) assay kits were provided by Nanjing Jiancheng Bioengineering Institute (Nanjing, China). The Trans Script First-Strand cDNA Synthesis Kit was supplied by Trans Gen Biotech (Beijing, China). The VDF membranes, and ECL agent were provided by Bio-Rad Laboratories, Incorporated (Irvine, CA, USA).
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7

Cultivation of porcine intestinal epithelial cells

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Intestinal porcine epithelial cells (IPEC-J2; ACC 701, Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Culture, Braunschweig, Germany) were cultivated and routinely maintained using DMEM/F12 (1:1) without L-glutamine (Pan Biotech, Aidenbach, Germany), adjusted to 2.4 g/L NaHCO3 (Pan Biotech) and supplemented with 1% insulin–transferrin–selenium ITS (Gibco/Life Technologies, Thermo Fisher Scientific, Vienna Austria), 2.5 mM Glutamax (Gibco/Life Technologies, Thermo Fisher Scientific), 5 ng/mL epidermal growth factor (Corning Inc, Corning, USA), and 16 mM HEPES (Merck/Sigma Aldrich, Vienna, Austria). The medium was further supplemented with 10% heat-inactivated (30 min at 56 °C) fetal bovine serum FBS (Gibco/Life Technologies, Thermo Fisher Scientific) and 1% penicillin–streptomycin (Merck/Sigma Aldrich) directly before use. Cultures were incubated at 39 °C and 10% CO2 under a humidified atmosphere (CO2 incubator, Binder, Tuttlingen, Germany) and sub-cultivated upon exceeding 90% confluency in the cultivation vessels. Routine testing for mycoplasma contaminations was conducted by PCR (Venor® GEM Classic Mycoplasma Detection Kit, Minerva Biolabs, Berlin, Germany).
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8

Comparative Analysis of Liver Cancer Cell Lines

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All cell lines were purchased from ATCC (Manassas, VA) and grown in flasks in monolayers at 37°C with 5% CO2. Four liver cancer cell lines were used, including HepG2/C3A (C3A) (derivative of HepG2, p53 WT), Hep3B2.1–7 (Hep3B, p53 null), PLC/PRF/5 (p53 dominant negative R249S mutation) , and Snu398 (p53 null), as well as four normal cell lines, THLE-2 (immortalized normal liver cells), hFOB1.19 (immortalized normal bone cells), IMR-90 (normal fetal lung cells), and BJ (normal foreskin fibroblasts). Cells were maintained in DMEM (C3A, Hep3B2.1–7, Snu398, PLC/PRF/5, and IMR-90), RPMI 1640 (Snu398), DMEM/F12 (hFOB1.19), or BEGM (THLE-2). Media was supplemented with 1% L-glutamine (Corning), 1% penicillin-streptomycin (Gibco), and 10% FBS (Atlanta Biologicals). THLE-2 cell media was also supplemented with 5 ng/mL epidermal growth factor (Corning) and 70 ng/mL phosphoethanolamine (Sigma-Aldrich), and the gentamycin/amphotericin and epinephrine provided with the BEGM media kit (Lonza, Walkersville, MD) were discarded as per ATCC instructions. THLE-2 cells were grown in flasks coated in fibronectin (Sigma-Aldrich), bovine serum albumin (Sigma-Aldrich), and bovine collagen (Advanced Biomatrix) as per ATCC instructions. All experiments were conducted between cell passages 5 and 20.
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9

IPEC-J2 Cell Culture Protocol

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IPEC-J2 cells were obtained from Dr. Guoyao Wu's laboratory at Texas A&M University and cultured in Dulbecco's modified Eagle medium/F12 (DMEM/F12, Thermo Fisher Scientific, MA, USA) supplemented with 5% fetal bovine serum (FBS, Thermo Fisher Scientific, MA, USA), 0.1% ITS (5 μg/L insulin, 5 μg/L transferrin and 5 ng/L selenious acid, Corning Incorporated, NY, USA), 0.01% epidermal growth factor (5 μg/L, Corning Incorporated, NY, USA) and 1% pen-strep (Thermo Fisher Scientific, MA, USA) at 37 °C in a humidified atmosphere with 5% CO2.
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10

Endothelial Cell Culture and Infection

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The dermal endothelial cell line human microvascular endothelial cells (HMEC-1), was originally a gift from Dr. E. Ades and Dr. T. J. Lawley (Emory School of Medicine and the Centers for Disease Control and Prevention). This cell line is currently available from ATCC. HMEC-1 were cultured in MCDB 131 (Gibco) supplemented with 10 mM L-glutamine, 10 ng/ml epidermal growth factor (Corning), 1 μg/ml hydrocortisone (Sigma), 15% Hyclone Fetal bovine serum (FBS, Thermo), and 25 mM HEPES (Gibco). Two types of primary cells, human dermal lymphatic endothelial cells (HDLEC) and human dermal microvascular endothelial cells (HDMEC), were purchased from ScienCell. These primary cells were cultured in endothelial cell medium (ECM) with the endothelial cell growth supplement (ECGS) and 5% FBS (all from ScienCell), according to the vendor’s protocol. All human cells were grown at 36.5°C under 5% CO2. For infection, passage of endothelial cells was limited to 20 or less for HMEC-1 and 13 or less for HDLEC and HDMEC. In preliminary experiments, we confirmed the morphological similarity of HDMEC to the cell line HMEC-1. For screening, HMEC-1 was selected for use as a stable microvascular endothelial cell type, and for some experiments was compared to HDLEC, which possesses morphologically well-organized intercellular junctions.
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