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9 protocols using anti np

1

Western Blot Analysis of Influenza PA-X

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MDCK cells were infected with rPR8 and rPR8-△PAX strains and cultured. The cells were collected 12 h post infection (h. p. i.), when the multiplicity of infection (MOI) was 10. Proteins were extracted, separated on 12% gels using SDS-PAGE, and transferred onto nitrocellulose membranes (Cytiva, Washington, USA). The blots were blocked using 5% skim milk (Applygen, Beijing, China) and then incubated overnight at 4°C with the following primary antibodies: anti-PA-X (1:1000) (Biorbyt, Cambridge, England), anti-NP (1:3000) (Genetex, Texas, USA), and anti-β-actin (1:10000) (Abcam, Cambridge, England). The membrane was then incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (1:8000) (Abcam, Cambridge, England). Protein bands were detected using an electrochemiluminescence (ECL) detection system.
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2

Antibody Characterization for Influenza

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Rabbit anti-PA, anti-PB1, anti-PB2, and anti-NP antibodies were purchased from GeneTex Inc. (GeneTex, United States). Mouse monoclonal antibodies against influenza A virus HA and M2 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was purchased from Beyotime Biotechnology. The antibodies of human RNA pol II, RNA pol II CTD phosphor Ser2 and RNA pol II CTD phosphor Ser5 were purchased from Active Motif company.
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3

Western Blotting of Cell Extracts

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For Western blotting, cells were washed in PBS, scraped in SDS gel-loading buffer, and boiled for 5 min. Proteins of total extracts were separated by SDS-PAGE and transferred to nitrocellulose membranes. Monoclonal antibody against HA was purchased from BioLegend. Anti-HA goat was from Bethyl Laboratories. Anti-emerin and anti-lamin A/C antibodies were from Abcam and Cell Signaling. Anti-tubulin, anti-gH2AX, and anti-ERK were from Cell Signaling. Anti-GAPDH, anti-actin, anti-lamin B, anti-RanGAP, anti-RanBP, and anti-phospho-ERK antibodies were from Santa Cruz Biotechnology. Anti-VP24 was from Biorbyt. Anti-VP35 and anti-NP were from Genetex. Anti-BAF antibody was from Abcam.
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4

Western Blot Analysis of Immune Proteins

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Total protein was lysed using RIPA buffer and normalized. Protein samples were separated by 10% SDS-PAGE and then transferred onto PVDF membranes (Roche, Switzerland). The protein membranes were incubated at 4°C overnight with primary antibodies at the appropriate concentrations, followed by incubation with an anti-mouse/rabbit secondary antibody labeled with horseradish peroxidase (Cell Signaling Technology, Danvers, MA, USA; dilution 1:10,000) for 1 h. The protein bands were visualized using a FluorChem E imaging system (ProteinSimple, San Jose, CA, USA). The primary antibodies were used: anti-PB2 (GeneTex, Irvine, CA, USA; dilution 1:1,000), anti-NP (GeneTex; dilution 1:1,000), anti-TRAF3 (Cell Signaling Technology; dilution 1:1,000), anti-IRF3 (Cell Signaling Technology; dilution 1:1,000), anti-HA-UB (Cell Signaling Technology; dilution 1:1,000), and anti-p-IRF3 (Ser386) (Bioss, Shanghai, China; dilution 1:1,000). GAPDH or β-actin was used as a protein control.
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5

Immunoprecipitation and Immunoblotting of Influenza Viral Proteins

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Cells were harvested in lysis buffer (50 mM Tris pH 8.0, 5 mM NaCl, 0.5% NP-40, and 1X protease inhibitor), frozen and thawed three times, and then the proteins were recovered. Immunoprecipitation (IP) proceeded overnight at 4 °C in IP buffer containing antibodies against Grail or Flag. The IP mixture was then incubated with Dynabeads Protein G (Invitrogen) for 1 h prior to isolation using a DynaMag magnet and washing three times with SNNTE buffer (5% sucrose, 1% NP-40, 0.5 M NaCl, 50 mM Tris pH 7.4, and 5 mM EDTA). The immunoprecipitates were resuspended in SDS-PAGE sample buffer, boiled, and loaded onto a gel. Following separation, the proteins were transferred to a nitrocellulose membrane and the blot was probed with antibodies diluted in PBS/Tween 20 with 5% non-fat milk. Antibody detection was carried out using enhanced chemiluminescence reagents (GE Healthcare), as described by the manufacturer. The primary antibodies used for immunoblotting were: anti-PA (GeneTex), anti-PB1 (GeneTex), anti-PB2 (GeneTex), anti-HA (GeneTex), anti-NA (GeneTex), anti-NP (GeneTex), anti-M1 (GeneTex), anti-M2 (GeneTex), anti-NS1 (GeneTex), anti-HA (81B8, Cell Signaling, USA), anti-beta actin (MAb1501, Chemicon), and anti-Grail antibodies.
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6

Influenza Virus Inhibition by NC-5 in MDCK Cells

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MDCK cells in 6-well plates were infected with 1.5 × 103 TCID50 of the H1N1 influenza virus and treated with NC-5 (10 μM, 40 μM, and 80 μM) and OC (10 μM). Cells were lysed after 24 h. In a time-addition experiment, the MDCK cells were infected with virus at a multiplicity of infection (MOI) of 5, and co-incubated for 1 h at 4 °C. After changing the supernatant, the cells were cultured at 37 °C. NC-5 (80 μM) was added at distinct time-points, as described in Results. Ten hours post-infection, cell lysates were harvested. The following antibodies were applied for immunoblotting: anti-M1 (Catalog No. GTX125928, GeneTex), anti-NP (Catalog No. GTX83054, GeneTex), and anti-β-actin (Catalog No. SC-47778, Santa Cruz). A Bio-Imaging system was applied for band intensity detection, and the proteins were quantified using ImageJ, which was normalized to β-actin levels.
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7

Western Blot Analysis of Viral Proteins

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Whole cell lysates were prepared and separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) followed by electro-transfer onto nitrocellulose (NC) paper (Bio-Rad). The filter was blocked in 5% skim milk for one hr, and then incubated with the primary antibodies at 4°C for overnight. Subsequently, the filter was rinsed with PBS containing 0.05% Tween 20 (PBS-T) for five times, followed by incubation with the corresponding secondary antibody conjugated with horseradish peroxidase (HRP) for 1 hr. After washing with PBS-T, protein signals were detected by enhanced chemiluminescence (ECL) and acquired by ImageQuant LAS 4000 (GE Healthcare, Uppsala, Sweden). The dilutions of each antibody were as follows: anti-β-actin (1:1,000; Signalway Antibody), anti-FLAG (1:2,500; Signalway Antibody), anti-β-actin (1:5,000; Jackson), anti-NS1 (1:2,000, GeneTex), anti-NP (1:1,000; GeneTex), anti-PKR (1:2,000, Abcam), anti-PKR-p (T446; 1:2,000; Abcam), anti-HA (1:2,500; Yao-Hong Biotechnology, Taiwan).
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8

Antibody panel for protein detection

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The antibodies used in this study included anti-HA (#3724, Cell Signaling), anti-V5 (#13202, Cell Signaling; T0057, Affinity Biosciences), anti-Flag M2 (F3165; Sigma), anti-OTUB1 (GTX57636, GeneTex), anti-lamin-B1 (GTX103292, GeneTex), anti-α-tubulin (Clone DM1A, T9026; Sigma), anti-ubiquitin (Ub) (A11227, Abclonal), anti-PB2 (GTX125926, GeneTex), anti-NP (GTX125989, GeneTex), anti-M1 (GTX125928, GeneTex), anti-NS1 (GTX125990, GeneTex), anti-NA (GTX125974, GeneTex), anti-NS2 (GTX125953, GeneTex), anti-GST (sc-459, Santa Cruz Biotechnology), and anti-His (05-949, Millipore) antibodies.
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9

Influenza A Virus Plasmid and Antibody Protocol

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pHW181-PB2, pHW182-PB1, pHW183-PA, pHW185-NP and PolI-luc plasmids are derived from influenza A/WSN/33 virus [24 (link)]. Rabbit anti-PB1, anti-PB2, anti-PA, anti-NP, and mouse anti-M1, anti-GAPDH, anti-p84 antibodies were purchased from GeneTex (Irvine, CA, USA). Mouse anti-β-actin antibody was purchased from Abcam (Cambridge, MA, USA).
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