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10 protocols using pifithrin μ

1

Bile Duct Ligation Rat Model

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Male Sprague-Dawley rats were obtained from the Animal Center of the Third Military Medical University (Chongqing, China). An experimental HPS rat model was successfully established by CBDL as previously described28 (link),29 (link). Rats were randomly divided into different groups (no blinding was done). Under isoflurane inhalation anesthesia, the HPS group underwent CBDL, while the control group underwent common bile duct exposure but no ligation. The SMase inhibitor GW4869 (15 mg/kg) (Sigma, USA), p53 inhibitor pifithrin-μ (15 mg/kg) (Sigma, USA), or miR-194 inhibitor anta-miR-194 (2 mg/kg) (GeneChem, China) was administered every 5 days for 5 weeks by intravenous injection following CBDL. Control group rats were injected with saline (0.9% NaCl) containing no drug. Four rats were excluded owing to complications during surgery. Specimens were collected at 5 weeks postoperatively. All rats were housed under standard laboratory living conditions (22–24 °C, 12 h light/12 h dark cycle) and were fed a standard laboratory diet (Altromin, Germany). All procedures performed on the animals were conducted according to the guidelines from the National Institutes of Health. In addition, all experimental protocols were approved by the ethical committee of Third Military Medical University.
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2

Cardiomyocyte Culture and Drug Treatments

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CMs from ventricles were dissociated as described in a previous study (Sander et al., 2013 (link)) and cultured at 28.5°C for 24 h in L-15 media with 10% fetal bovine serum (Invitrogen) before being exposed to drugs. Shz-1 (a compound for upregulating Nkx2.5), RA (a compound for inhibiting Calr) and pifithrin-μ (a specific inhibitor of p53) were purchased from Sigma–Aldrich (Shanghai, China) and dissolved in DMSO for storage. Drug treatment conditions included 20 mM glucose for 24 h, 2.5 μM Shz-1 for 72 h, 1 μM RA for 96 h and 10 μM pifithrin-μ for 24 h. The final DMSO concentration was kept at 0.1%.
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3

LPS-Induced Macrophage Activation and Cytokine Production

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BALB/c mice were injected intraperitoneally with 10 μg LPS (Sigma-Aldrich) in 1 ml sterile saline. Peritoneal macrophages were harvested 3 days post LPS injection by peritoneal lavage with 6 mL cold PBS and collected by centrifugation. Macrophages were enriched by adherence to plastic, recovered overnight and re-stimulated in vitro with 100 ng/mL LPS and 25 U IFN-γ (R&D systems) at 37°C or 39.5°C for indicated time points. Supernatant was collected for the presence of TNF-, IL-1 (Biolegend), IL-6 (BD Biosciences) and HSP70 (R&D systems) by ELISA. In some experiments, macrophages were treated with HSP70 inhibitors (KNK437, EMD chemicals; Pifithrin-μ, Sigma-Aldrich) together with LPS/IFN-γ.
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4

Evaluating HAZV Inhibition by Small-Molecules

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Small-molecule inhibitors VER155008 (VER) and pifithrin-μ (PIF) (Sigma-Aldrich) were both dissolved in dimethyl sulfoxide (DMSO) (Sigma-Aldrich) to make 10 mM stocks, which were further diluted in DMEM supplemented with 2% FBS to the appropriate working concentrations. Assay results were compared to those obtained with DMEM supplemented with 2% FBS containing 0.4% DMSO. A549 cells were seeded in 12-well plates such that the cells were 60% to 70% confluent when infected and were then exposed to the appropriate concentration of PIF and VER. After 1 h, cells were infected with HAZV at an MOI of 1 and subsequently replaced with fresh media containing appropriate concentrations of PIF and VER. At 24 h postinfection, cell culture supernatants and whole-cell lysates were harvested and plaque assayed or analyzed by Western blotting.
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5

Modulation of Hsp70 Expression and Function

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For induction and inhibition of Hsp70 expression or function, certain chemicals were utilized, including the HSF1 inducer U-133, which was previously selected from the library of small molecules of the Pacific Institute of Bioorganic Chemistry, Russian Academy of Sciences (Vladivostok, Russia). U-133 is an acetylated tris-O-glucoside echinochrome and it was obtained by the chemical modification of the sea urchins pigment echinochrome [31 ]. U-133 was found to induce synthesis in human U-937 promonocytes [24 (link)] and in the substantia nigra of rats [25 (link)]. The HSF1 inhibitor CL-43 was previously shown to inhibit Hsp70 synthesis in various cancer cells [26 (link)]. Moreover, 2-phenylethynesulfonamide (PES) or pifithrin-μ, an inhibitor of the chaperonic function of Hsp70 [32 (link)], was purchased at Sigma-Aldrich (St. Louis, MO, USA).
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6

Noribogaine and Pifithrin-μ Binding Assay

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Noribogaine was obtained from Cfm Oskar Tropitzsch GmbH (Marktredwitz, Germany). Pifithrin-μ was obtained from Sigma-Aldrich (St. Louis, MO). [3H]Dihydroxyphenylethylamine (dopamine; 36.6 Ci/mmol) and [3H]CFT (76 Ci/mmol) were obtained from Perkin Elmer (Boston, MA, USA). Cell culture media, supplements and antibiotics were purchased from Invitrogen (Carlsbad, CA, USA). Other cell culture reagents, such as bovine serum albumin (BSA) and Complete™ protease inhibitor mixture were purchased from Roche (Mannheim, Germany), SDS from BioMol GmbH (Hamburg, Germany), scintillation mixture (Rotiszint® eco plus) and Tris from Carl Roth GmbH (Karlsruhe, Germany). Anti-GFP antibody (ab290) was obtained from AbcamPlc (Cambridge, UK). Protein A-Sepharose and horseradish peroxidase linked anti-rabbit IgG1-antibody were purchased from Amersham Biosciences. All other chemicals used in experiments were of analytical grade. The 0.4% trypan blue solution was obtained from Sigma-Aldrich (St. Louis, MO).
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7

Evaluation of VACV Inhibitors in A549 and HeLa Cells

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A549 or HeLa cells were seeded in 96-well plates the previous day and infected with modified VACV viruses as specified in the text at an MOI of 1 (fluorescence readout) or 0.1 (viral titer). For drug treatment, compounds were added at specified concentrations prior to virus addition. Inhibitor compounds: Triptolide, Quercetin (Tocris Bioscience), KRIBB11 (EMD Millipore), KRIBB3, Pifithrin-μ, Myricetin (Sigma Aldrich), and Heat Shock Protein Inhibitor I/KNK437 (Santa Cruz Biotechnology, Inc.) For fluorophore assays, cells were fixed at 18 hpi with 4% formaldehyde. Plates were read on a Tecan infinite M1000 for Venus (excitation: 515 nm and emission: 528 nm) and mCherry (excitation: 587 nm and emission: 610 nm). For plaque assays, virus was collected 24 hpi and titered by plaque assay.
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8

Molecular Mechanisms of Mitochondrial Regulation

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Culture medium Dulbecco’s modified Eagle’s medium (DMEM) and Trypsin-EDTA were purchased from Gibco (Grand island, NY, USA). Polyinosinic-polycytidylic acid (poly(I:C)), SB203580, SC 79, ZLN005, C16, mito TEMPO, Pifithrin-μ, streptomycin and penicillin were all purchased from Sigma (St. Louis, MO, USA). The concentrations of poly(I:C), penicillin, and streptomycin were referred from our previous study [16 (link),21 (link)]. The concentration of SB203580 was referred from our previous report [22 (link)]. The concentration of SC 79 was selected by our preliminary tests (data not shown). The concentrations of ZLN005, C16, Pifithrin-μ and mito TEMPO were referred from published studies [23 (link),24 (link),25 (link),26 (link)]. Anti-p38, anti-p-p38, anti-p53, anti-p-p53, anti-AKT, anti-p-AKT, anti-PGC-1α, and anti-β-actin were all bough from Cell Signaling Technology (Danvers, MA, USA). Secondary antibodies and recombinant TNF-α protein were obtained from Abcam Inc. (Cambridge, MA, USA). MitoSOX and JC-1 were obtained from Thermo Scientific (IL, USA). Antioxidant superoxidase dismutase SOD kit and ApopTag® Peroxidase In Situ Apoptosis Detection Kit were obtained from EMD Millipore (Gibbstown, NJ, USA).
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9

Chemotherapeutic Agents Protocol

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Amiloride hydrochloride was purchased from Tocris Bioscience (Bristol, United Kingdom) and resuspended at a stock concentration of 100 mM with dimethyl sulfoxide (DMSO; Sigma‐Aldrich, St. Louis, Missouri). Doxorubicin and carboplatin (both from Accord Healthcare, Kirkland, Quebec, Canada) were obtained from the Ontario Veterinary College pharmacy and maintained at their stock concentrations of 2 and 10 mg/mL, respectively, in isotonic solution. Pifithrin‐μ was purchased from Sigma‐Aldrich and maintained in UltraPure DNase/RNase‐free distilled water at 1 mM.
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10

Noribogaine and Pifithrin-μ Binding Assay

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Noribogaine was obtained from Cfm Oskar Tropitzsch GmbH (Marktredwitz, Germany). Pifithrin-μ was obtained from Sigma–Aldrich. [3H]Dihydroxyphenylethylamine (dopamine; 36.6 Ci/mmol) and [3H]CFT (76 Ci/mmol) were obtained from PerkinElmer Life Sciences. Cell culture media, supplements, and antibiotics were purchased from Invitrogen. Other cell culture reagents, such as BSA and CompleteTM protease inhibitor mixture, were purchased from Roche Applied Science, SDS from BioMol (Hamburg, Germany), scintillation mixture (Rotiszint® eco plus), and Tris from Carl Roth (Karlsruhe, Germany). Anti-GFP antibody (ab290) was obtained from Abcam (Cambridge, UK). Protein A-Sepharose and horseradish peroxidase–linked anti-rabbit IgG1 antibody were purchased from Amersham Biosciences. All other chemicals used in experiments were of analytical grade. The 0.4% trypan blue solution was obtained from Sigma–Aldrich.
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