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45 protocols using anti cd8 percp cy5

1

CFSE-based T cell proliferation

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PBMC were washed twice with PBS, incubated in protein-free PBS, and labeled for 5 min at room temperature with 5 μM of CSFE (5-carboxy fluorescein diacetate succinimidyl ester) (Molecular Probes, Eugene, OR). Cells were washed three times with PBS containing 5% FBS, resuspended in RPMI 5% FBS, and incubated with Der p (200 AU/mL) or its vehicle (glycerin) for up to 8 days. At different periods of time, cells were collected and labelled with anti-CD4 PE-Cy5, anti-CD8 PerCP-Cy5, and anti-CD3 APC (BD Pharmingen). Fractions of stained cells were acquired and analyzed on a FACSCalibur flow cytometer to calculate the percentage of CD4+ T cells undergoing division. A CFSE profile was generated using FlowJo v7/8 (Tree Star Inc., Ashland, OR, USA).
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2

Tonsil-Derived T-Cell Isolation and Infection

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Tonsils were obtained as de-identified specimens from discarded pathologic specimens of children without known HIV-1 infection undergoing elective tonsillectomies at Children’s Hospital Denver in accordance with the Colorado Multiple Institutional Review Board (CMIRB), which reviewed this protocol on September 23, 2008 and determined that it does not constitute human subjects research. For this reason, informed consent is not required.
Tonsils were mechanically disaggregated in sterile phosphate buffered saline. The cell suspension was filtered through a 70 micron filter (Fisher Scientific, Denver, CO) and washed with PBS. Single cell suspensions were infected with NLENG1-IRES as described [133] (link), then IL-4 (25 ng/ml) was added to the cultures and again on day 3 post infection. For flow cytometry, cells were stained with anti-CD3-PerCP, anti-CD8-PerCP-Cy5, anti-CD45RA-PE-Cy5, anti-CD62L-PE, (all from BD Pharmingen) and analyzed on a Becton Dickinson (BD) LSR II flow cytometer (UC Denver). Gating for GFP expression was on CD3+CD8CD45RA+ cells.
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3

Tetramer Generation and Validation for CD8+ T Cell Analysis

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pHLA class-I (pHLA-I) tetramers were generated by refolding each peptide with its restricted HLA α-heavy chain-BirA and β2-microglobulin53 (link),85 (link),86 (link) before 8:1 conjugation with PE- or APC-streptavidin (BD, cat #554061 and #554067 respectively) to generate tetramers; B7/NP30, B7/NS1196, B8/NP30, B8/NP92, B8/NP479, B35/HA231 and B35/NS1260. To test newly generated tetramers, 0.2–0.4 × 106 frozen IBV pool-specific CD8+ T cells were thawed in RF10 supplemented with 2 µg/ml DNAse. Cells were incubated with anti-human FcR block (Miltenyi Biotec) for 15 min and stained with tetramer at room temperature for 1 h before surface staining on ice for 30 min with anti-CD3-BV510 (1:200, BioLegend #317332), anti-CD4-BV650 (1:200, BD Horizon #563875), Live/Dead NIR (1:800, Invitrogen #L34976) and anti-CD8-PerCP-Cy5.5 (1:50, BD Pharmingen #565310). Cells were then fixed with 1% paraformaldehyde (PFA) (Electron Microscopy Sciences) for 20 min on ice, acquired on an LSRII Fortessa and analyzed with FlowJo v10.8.1.
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4

Isolation and Characterization of Tumor-Infiltrating Lymphocytes

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Tumor infiltrating lymphocytes (TILs) were isolated by mincing the tumor mass and digesting with collagenase and hyaluronidase for 1 hr in a 37 °C incubator. After incubation, TILs were passed through a 40 µm cell strainer, and washed with PBS + 2% FBS + 5 mM EDTA (Sigma Alrdige, St. Louis, MO, USA). The cells were spun down prior to resuspension in 100 µL of FACS buffer containing Fc-blocking antibodies for 10 min at 4 °C. The cells were then incubated in LIVE/DEAD dye (Thermo Fisher) and stained with the following antibodies for 20 min at 4 °C: anti-CD3 Alexa Fluor 488 (557666, BD Bioscience, San Jose, CA, USA), anti-CD4 PE-Cy7 (552775, BD Bioscience), anti-CD8 PerCP-Cy5.5 (551162, BD Bioscience). The cells were then washed in FACs buffer and re-suspended in PBS + 2% FBS. The cells were then analyzed with a BD FACSAria III.
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5

Comprehensive T-Cell Immunophenotyping by Flow Cytometry

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Cells harvested from overnight stimulation cultures were incubated with live/dead aqua V510 for 15 min on ice. The cells were then surface stained for 30 min on ice using anti-CD3-FITC (BioLegend, clone UCHT1, 1:200, Cat# 300406), anti-CD4-APC-H7 (BD Pharmingen™, clone RPA-T4, 1:200, Cat# 560158), and anti-CD8-PerCPCy5.5 (BD Biosciences, clone RPA-T8, 1:200, Cat# 560662) antibodies. After fixation and permeabilization with Cytofix and Perm (BD Biosciences, Cat# 554714) on ice for 15 min, intracellular staining was performed on ice for 30 min using anti-TFNα-PE-Cy7 (BD, clone MAb11, 1:200, Cat # 557647) and anti-IFNγ-APC (BD Pharmingen™, clone B27, 1:200, Cat# 554702) antibodies. After the final wash step, the cells were resuspended in 200 µL of FACS buffer. Samples were acquired using an FACSAria III instrument (BD Biosciences, San Diego, CA, USA) and analysed using the FlowJo software (Treestar, San Carlos, CA, USA).
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6

Antigen-Specific T Cell Cytokine Profiling

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PBMCs were adjusted to 1 x106 cells/mL in 24-well plate and stimulated with the antigens mentioned above for 22–24 hours at 37°C in 5% CO2. Four to six hours before the end of this incubation, 200 μL aliquots of the supernatant were collected for cytokine measurement, and 200 μL of fresh RPMIc medium with Brefeldin A (10 μg/mL) were added to block cytokine secretion. At the end of the incubation, cells were collected, washed twice with PBS and stained with anti-CD3-Alexa488, anti-CD4-PE and anti-CD8-PercP-Cy5.5 conjugated antibodies (all from BD, San Jose CA, USA). After fixation and permeabilization with Cytofix-Cytoperm (BD, San Jose CA, USA), cells were further stained with anti-INFγ-PE-Cy7 and anti-IL-10-APC (BD, San Jose CA, USA) conjugated antibodies for 20 minutes at 4°C, then fixed with 4% paraformaldehyde. Isotype-matched antibodies and basal fluorescence were assayed as controls. 100,000 events were acquired in a FACSVerse cytometer and then analyzed in FlowJo vX.0.7 (S1 Fig). The ratio of antigen-specific T cells producing cytokines was obtained by dividing the percentage of cells expressing cytokines in response to antigens (experimental conditions) by the percentage of cells expressing cytokines in response to RPMI (unstimulated cells).
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7

Phenotyping Regulatory T Cells by Flow Cytometry

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After 5-day incubation, cells were stained with anti-CD8 PerCP-Cy5.5, CD4 PE, CD25 APC and anti-BrdU FITC (BD, Franklin Lakes, NJ, USA); while regulatory T cells (Treg) were identified with anti-CD4 PE, FoxP3 PerCP-Cy5.5, CD25 APC (BD, Franklin Lakes, NJ, USA). Samples were analyzed by flow cytometry. 10,000 events were registered within the lymphocyte region identified according to their size (Forward-scatter, FCS) and complexity (Side-scatter, SSC), considering their activation status [46 (link)].
Data were analyzed with FlowJo software (v.10; Tree Star, Inc., Ashland, OR, USA).
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8

Flow Cytometry Staining Reagents

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Anti-CD3 FITC, anti-CD3 APC, anti-CD4 PerCP-cy5.5, anti-CD8-PerCP-cy5.5, anti-CD8 FITC, anti-CD45RO FITC, anti-CD45RO PE, anti-IFN-γ FITC, anti-IFN-γ APC, anti-IL-4 PE and isotype-matched control mAbs were purchased from BD PharMingen (San Diego, CA, USA). Anti-IL-22 PE was purchased from R&D Systems (Abingdon, UK). Anti-IL-17 APC was purchased from eBioscience (San Diego, CA, USA). Phorbol myristate acetate (PMA), ionomycin, saponin and Brefeldin A (BFA) were purchased from Sigma-Aldrich (Fluka, Sigma, USA).
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9

Characterizing Immune Cell Responses

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SPCs (Lipoid S100) were obtained from Lipoid GmbH (Ludwigshafen, Germany) with a purity of 97.6%. It was used as received and stored at −20 °C. GDO was a kind gift from Croda, UK, which contained minimally 95% diglycerides according to the producer. All tool compounds were used as obtained. IR820 was purchased from Sigma. aPD-L1(catalog number BE0101) used in vivo purchased from Bio X Cell. Anti-CD3-PerCP-Cy5.5 (catalog number 551163), anti-CD4-FITC (catalog number 553046), anti-CD8-PE (catalog number 553032), anti-CD4-FITC (catalog number 553046), anti-CD25-APC (catalog number 557192), and anti-Foxp3-PE (catalog number 563101), anti-CD11b-FITC (catalog number 557396), anti-CD11c-FITC (catalog number 557400), anti-CD80-PE (catalog number 560016), anti-CD86-APC (catalog number 553692), anti-LY-6G/LY/6C-PE (catalog number 553128), anti-CD3-FITC (catalog number 553065), anti-CD8-PErCP-Cy5.5 (catalog number 553030), anti-CD62L-APC (catalog number 562910), and anti-CD44-PE (catalog number 559250) were purchased from BD Biosciences.
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10

Immune Cell Profiling in Healthy PBMCs

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CD4, CD8, and CD56 positive cells in PBMCs isolated from healthy human donors were detected by flow cytometry on a fluorescence-activated cell sorter FACScan (Becton Dickinson, Walpole, MA, USA). Alexa Fluor 700 anti-CD4 (eBioscience, San Diego, CA, USA), anti-CD8-Per-CP-Cy5.5, and anti-CD56-Per-CP-Cy5.5 (BD Pharmingen, San Diego, CA, USA) antibodies were used to detect expression levels of CD4, CD8, and CD56, respectively. Approximately 1 × 10^6 pelleted PBMC cells were blocked in PBS buffer with 1% BSA for 20 min at room temperature. The cells were then stained with antibodies at 4 °C for 30 min, washed twice in PBS buffer with 1% BSA and resuspended in 0.5 ml staining buffer for FACScan analysis.
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