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13 protocols using lsm 710 inverted microscope

1

Visualization of OsSCR106 Expression in Roots

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Roots of pUBI::OsSCR106-EGFP and pOsSCR106::OsSCR106-EGFP were fixed in 4% paraformaldehyde in phosphate-buffered saline (PBS) for 2 h, washed with dH2O and incubated in ClearSee solution (Kurihara et al., 2015 (link)) for ~2 weeks, and then imaged with the Zeiss LSM710 inverted microscope.
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2

Imaging Chicken Macrophage Dynamics

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Splenocytes were prepared as described above from 12‐week‐old CSF1R‐eGFP reporter transgenic birds. 0·2 × 106 cells were plated on fibronectin‐coated 8‐well Nunc Lab‐Tek II Chamber slides (Thermo Fisher Scientific) and incubated at 41˚C with RPMI medium supplemented with 10% (v/v) heat‐inactivated FBS, 2 mM L‐glutamine and antibiotics (100 g/ml penicillin, 100 g/ml streptomycin) for one hour. After one‐hour, non‐adherent cells were gently washed off with RPMI and remaining adherent cells were incubated overnight in complete RPMI medium supplemented with 200 ng/ml recombinant chicken CSF1 produced as described previously [30 (link)]. The next day slides were chilled on ice for 30 minutes and stained using XCL1AF647, anti‐chicken MHCII‐RPE and KUL01‐RPE (Table 1) in RPMI. After one hour, cells were washed in phenol red‐free RMPI medium. After staining, phenol red‐free RMPI with 10% (v/v) FBS was added to the cells and the chamber slides were placed on a microscope stage heated to 41˚C and imaged using a Zeiss LSM 710‐inverted microscope.
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3

Activation of NLRP3 Inflammasome in Macrophages

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Bone marrow-derived macrophages were seeded in 4-chamber slides (Thermo Fisher Scientific, Waltham, MA, USA) at a density of 1 × 105 cells per chamber. After an overnight incubation, the cells were primed with 50 ng/ml LPS for 3 h, treated with 10 μM InflammaProbe-1 for 1 h, and stimulated with 10 μM nigericin for another hour to induce NLRP3 activation, as described in the literature (18 (link), 33 (link)). Then, the cells were washed twice with PBS, fixed with 4% neutral buffered formalin (NBF) for about 2 min, and washed again twice with PBS. Immediately, the chambers were removed from the microscope slides in accordance with the manufacturer’s instructions. Cells were mounted with Prolong™ Diamond Antifade Mountant with DAPI (Invitrogen, Waltham, MA, USA) and imaged through confocal fluorescence microscopy using an LSM 710 inverted microscope (Zeiss™, Jena, Germany). The InflammaProbe-1 fluorescence intensity of each image was expressed as RFU per cell, which was calculated by dividing the raw integrated density, measured with Fiji ImageJ2 software, by the number of DAPI-stained nuclei present in the image. The data were representative of four replicates per group.
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4

Multimodal Imaging of Cardiomyocytes

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Cells were visualised on a ELYRA PS.1 (Zeiss) attached to a LSM 710 inverted microscope (Zeiss) with a 100x oil objective (Zeiss) and a DAPI/GFP/mRFP/Alexa 633 fluorescence filter set. Optical sections (84 nm) were collected through entire cell volumes using 5 grid patterns for structured illumination microscopy. Image stacks were processed using ZEN Black software (Zeiss) and displayed as transparent three-dimensional (3-D) volumetric renderings. Widefield fluorescence microscopy was performed using a FSX100 (Olympus). For transmission electron microscopy, iPS-CMs cultured on Thermanox coverslips (ThermoFisher) were fixed in 2% formaldehyde, 2.5% grade I glutaraldehyde, and 0.03% picric acid in 0.1 M cacodylate buffer, pH 7.4 at 4 °C prior to incubation in 1% osmium tetroxide and 1.5% potassium ferrocyanide dissolved in cacodylate buffer. After contrast staining with 1% uranyl acetate in cacodylate buffer, cells were dehydrated and infiltrated with a 1:1 mixture of Epon-Araldite (Electron Microscopy Sciences) and propylene oxide. Embedding resins were polymerised for 24 to 48 h at 60 °C and 60 nm-thick sections on were placed on copper grids and imaged on a Jeol 1200EX (80 kV).
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5

Immunofluorescence Staining of Astrocyte Endocytosis

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All staining of astrocytes for markers of endocytosis were performed in the same manner. Cells were plated in 96-well glass bottom plates (IBIDI) at a density of 10,000 cells per well. First cells were fixed in 4% paraformaldehyde for 15 minutes at room temperature and then permeabilized using 0.2% TritonX-100 for 10 minutes at room temperature, blocked for 1 hour at room temperature using 1% normal goat serum, 1% normal donkey serum in 5% PBS. Primary antibodies were diluted according to supplier’s suggestions in blocking solution and incubated overnight at 4°C. The next day, cells were washed and incubated with secondary antibodies at 1:1000 dilution for an hour at room temperature and imaged using a Zeiss LSM 710 inverted microscope. Antibodies used were as follows: EEA1 (mouse BD biosciences 610457, 1:100), Rab5 (rabbit, CST, 1:400), Rab7 (rabbit, CST, 1:100), Rab11 (rabbit, CST, 1:50). Imaging and quantification criteria are described below.
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6

Cryoprotectant Effects on Red Blood Cells

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Live red blood cell confocal imaging, before and after freezing with cryoprotectants, was undertaken using a Zeiss LSM 710 inverted microscope, equipped with three photo-multiplier detectors (GaAsP, multialkali, and BiG.2) and a multi-channel spectral imaging detector. Red blood cells (diluted 500-fold) were placed on MatTek glass bottom dishes (no. 1.5, 35 mm) and brightfield images were taken using a C-Apochromat 63x/1.20 W Korr M27 objective lens and ×3.0 zoom. Z-stacks were taken every z = 0.3 μm until the whole cell was imaged. Zeiss ZEN (black edition) 2.3 lite was utilized for image collection and maximum intensity projection processing.
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7

Multimodal Imaging of Organelle Dynamics

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Day 1: U2OS and ClompR cells were seeded in Eppendorf’s black Cell Imaging 24-well plates (Hamburg, Germany), with ClompR cells immediately supplemented with 10 µM Clomp. Day 2: CNSDs were added to U2OS cells at 10 µM (Clomp and Ethop) or 3 µM (Pimo), with 0.1% DMSO (the drug solvent) used for the drug-free control. Day 3: CHQ was added to U2OS cells at 20 µM. Day 5: Cells were washed with fresh medium and incubated for 45 min in the presence of 300 nM LTR and 1 µg/mL Hoechst 33342 in the dark. Cells were then washed with fresh growth medium and visualized using a confocal Zeiss LSM 710 inverted microscope (×63 magnification, Oberkochen, Germany) during incubation at 37 °C in an atmosphere of 5% CO2.
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8

Choroid Immunostaining and Imaging

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After in vivo imaging, the LCNV mice that had been IP injected with InflammaProbe-1 at 10 mg/kg were sacrificed and enucleated. Then, the choroids were dissected and co-stained with DyLight® 649-conjugated IB4 and Alexa Fluor® 594-conjugated antibody against anti-IBA1. See Supplementary material for more details on the immunostaining procedure. The stained tissues were mounted on microscope slides with Prolong™ Diamond Antifade Mountant with DAPI (Invitrogen, Waltham, MA, USA) and imaged through confocal fluorescence microscopy using an LSM 710 inverted microscope (Zeiss™, Jena, Germany). The images were representative of 12 choroids.
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9

Live Red Blood Cell Imaging

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Live red blood cell confocal imaging,
before and after freezing with cryoprotectants, was undertaken using
a Zeiss LSM 710 inverted microscope, equipped with three photomultiplier
detectors (GaAsP, multialkali, and BiG.2) and a multichannel spectral
imaging detector. Red blood cells (diluted 500-fold) were placed on
MatTek glass bottom dishes (no. 1.5, 35 mm) and brightfield images
were taken using a C-Apochromat 63x/1.20 W Korr M27 objective lens
and ×3.0 zoom. Z-stacks were taken every z =
0.3 μm until the whole cell was imaged. Zeiss ZEN (black edition)
2.3 lite was utilized for image collection and maximum intensity projection
processing.
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10

Immunofluorescence Labeling of RBL Cells

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RBL cells were incubated with GO in buffered salt solution (BSS: 135 mM NaCl, 5.0 mM KCl, 1.8 mM CaCl2, 1.0 mM MgCl2, 5.6 mM glucose, and 20 mM HEPES, pH 7.4). Cell fixation was carried out with 4% paraformaldehyde in PBS for 10 minutes followed by multiple washes with 1 mg/ml BSA in phosphate-buffered saline (PBS). For F-actin labeling, fixed cells were incubated with 5 µg/mL A647-phalloidin in PBS (10 mg/mL BSA) using 0.1% v/v Triton-X100 for 20 minutes at room temperature before washing with PBS. For FN immunofluorescence, fixed cells were labeled with primary antibody (5–10 µg/mL) at room temperature for 1 h in PBS with 10 mg/mL BSA. After additional washing, fluorescent secondary antibody (5–10 µg/mL) in PBS with 10 mg/mL BSA was added to the samples at room temperature for another 1 h. A final series of PBS washes were performed before storing samples in 2 mL of PBS with 0.01% sodium azide at 4°C until ready for imaging on the microscope. Unless otherwise indicated, samples were imaged on a Zeiss LSM 710 inverted microscope with a motorized stage using a 63× Oil Plan-Apochromat objective lens. A DF 488/561/647 filter set was used to perform sequential 1/2/3 color imaging of the samples. The area of the focal plane was adjusted for optimal image quality.
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