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33 protocols using arsenic trioxide

1

Cytotoxicity Assays for Anticancer Agents

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Cytotoxicity assays were performed for metformin (Sigma-Aldrich), arsenic trioxide (Sigma-Aldrich), oligomycin (Sigma-Aldrich), antimycin (Sigma-Aldrich), and aTOS (Sigma-Aldrich) (Fig S3A). Experimental concentrations with low cytotoxicity were chosen and assayed for 24 h. All assays were performed in biological triplicates and analyzed for viability using flow cytometry, as described below.
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2

Accumulation of Mutations in Heavy Metal Exposed E. coli

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Arsenic trioxide
(As2O3), cadmium chloride (CdCl2),
potassium dichromate (Cr2K2O7), copper
sulfate (CuSO4), nickel chloride (NiCl2), and
lead acetate trihydrate (Pb(CH3CO2)2) were obtained from Sigma Aldrich Inc. (St. Louis, MO). We used E. coli, designated K-12 derived
DH5α strain and maintained for years in our laboratory, to conduct
MA experiments. A single ancestor generated a total of 36 populations,
which were exposed to low concentrations (100 nM) of six heavy metals
[As2O3, CdCl2, Cr2K2O7, CuSO4, NiCl2, and Pb
(CH3CO2)2], with six populations
for each metal covering three replicants. The MA lines were founded
after independent propagation and evolution for approximately 1650
generations. Each population was passaged in the exponential phase
to minimize the affection of population size. This MA experiment from
a single colony has strict bottlenecks, allowing mutations to accumulate
in neutral and mitigates selectivity.2 (link) To
keep the number of bacteria between bottlenecks roughly the same across
media, single-cell bottlenecks were enforced every 12 h for a total
of ∼4800 cells in each medium.
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3

Honokiol and Arsenic Trioxide Synergistic Assay

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Honokiol with purity >98% (sigma) was dissolved in corn oil. Arsenic trioxide was obtained from Sigma‐Aldrich. Arsenic trioxide was dissolved in 1.65 M NaOH at 5 × 10−2 M as a stock solution. Monoclonal GAPDH and anti‐SIRT3 were purchased from Cell Signaling Technology. All other antibodies were obtained from Santa Cruz Biotechnology. The protein assay kit was purchased from Bio‐Rad Laboratories. All the chemicals employed in the study were of analytically pure and of culture grade.
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4

Arsenic and Menadione Cytotoxicity Assay

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Arsenic trioxide and menadione were purchased from Sigma Aldrich. All antibodies were obtained from commercial sources. Detailed descriptions of the antibodies are provided in the Supplemental Methods.
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5

Antibodies for Cell Signaling Analysis

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Antibodies to PTEN, PARP, Flag and α-Tubulin were purchased from Cell Signaling Technology Inc. Rabbit polyclonal antibodies for BubR1 was developed in the laboratory. Bub3 and Cdc20 antibodies were purchased from Santa Cruz Biotechnology. Human IgGs against centromere proteins (CREST) were purchased from Antibodies Inc. Arsenic trioxide was purchased from Sigma Aldrich.
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6

Apoptosis Detection in Arsenic and Bortezomib Treated Cells

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Cells were treated with arsenic trioxide (Sigma-Aldrich Co.) or Bortezomib (Millennium Pharmaceuticals, Cambridge, MA, USA) for 24 h. Dual staining with Annexin V-fluorescein isothiocyanate (FITC) and PI (Propidium iodide) (Becton Dickinson) was used to detect apoptosis according to the manufacturer’s instructions as previously reported (Wen et al, 2008 (link), 2010 (link)).
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7

Antimicrobial and Cytotoxic Agents Screening

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Mitomycin C, zinc pyrithione, methy-umbelliferyl-glucuronate (MUG), and the reagents used for the Miller assays for recA were purchased from Sigma-Aldrich (St. Louis, MO). Zidovudine, 5-fluorouracil, 5-azacytidine, paraquat, arsenic trioxide, and didanosine were also from Sigma-Aldrich. Ciprofloxacin was obtained from Bayer Pharmaceuticals. E-test strips were from Biomerieux (Durham, NC).
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8

Compound Dissolution and Preparation

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Posaconazole (Selleck Chemicals; S1257), voriconazole (Selleck Chemicals; S1442), vismodegib (GDC-0449; LC Laboratories), sonidegib (NVP-LDE225; LC Laboratories), and KAAD-cyclopamine (Calbiochem; 239804), SAG (Cayman Chemical; 11914) were dissolved in DMSO. Arsenic trioxide (Sigma) was formulated as previously described (16 (link)). 20(S)-hydroxycholesterol (Steraloids Inc; C6480-000), lathosterol (Sigma), desmosterol (Sigma), and cholesterol (Sigma) were prepared in ethanol.
For in vivo experiments, Posaconazole oral suspension (Noxafil, Merck) was obtained from the pharmacies of University of Texas Southwestern, Stanford Comprehensive Cancer Center or The Children’s Hospital and Research Center at Oakland and diluted as necessary with sterile water.
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9

Generation and Maintenance of Knockout Cell Lines

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LO2 human hepatocytes (Hu et al, 2013; Xu et al, 2019), liver cancer cells (HepG2, Huh‐1, JHH5 and JHH7; Ichimura et al, 2013), HeLa and MEFs (Tan et al, 2016) were maintained in DMEM supplemented with 10% fetal bovine serum (FBS) in a 5% CO2, humidified atmosphere at 37ºC. For generation of MOAP‐1 or p62 knockout cells using the CRISPR‐Cas9 system, the following gRNA sequences were cloned into the pX330‐U6‐Chimeric_BB‐CBh‐hSpCas9 expression vector (Cong et al, 2013): MOAP‐1 TGCGGAGACTAGTCACGCCC; p62/SQSTM1 AATGGCC‐ATGTCCTACGTGA. Cells were transiently transfected with the pX330 vectors. Three days post‐transfection, cells were single cell sorted by flow cytometry. Clones were expanded and screened for successful gene knockout of MOAP‐1 or p62 by Western blotting and validated by Sanger sequencing. At least two clones with successful gene KO were used in all experiments. For generation of stable cell lines, pIRES‐GFP/Myc‐MOAP‐1‐neomycin or pHTN‐Halo‐p62 expression vectors were transfected into the host cells, and 48 h later cells were selected with G418 antibiotics (500 µg/ml, Gibco) until stable pools were acquired. Treatment of cells with the proteasome inhibitor MG132 (Sigma‐Aldrich) or arsenic trioxide (Sigma‐Aldrich) to induce formation of p62 bodies were carried out as previously described (Eino et al, 2015; Pan et al, 2016).
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10

Evaluating NCC Migration Inhibitors

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hESC-derived NCC were exposed for 48 h to non-cytotoxic concentration of different NCC migration-inhibiting substances in N2 medium containing EGF (20 ng/ml) and FGF2 (20 ng/ml). Six compounds were used: geldanamycin (16 nM, Selleckchem), arsenic trioxide (1 µM, Sigma-Aldrich), thricostatin A (TSA, 10 nM, Sigma-Aldrich), valproic acid sodium salt (VPA, 250 µM, Sigma-Aldrich), triadimefon (100 µM, Bayer Crop Science) and pentabromodiphenyl ether (PBDE-99, 15 µM, Clickchem). Two different solvent control groups were also produced: NCC were exposed to 0.04 % DMSO or simply to N2 medium for 48 h. Finally, a third control group (exposed to N2 medium only) was added specifically as control of arsenic trioxide, since the testing of this substance was performed not in parallel with the other compounds.
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