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24 protocols using trypsin

1

SNU-478 Cell Line Cultivation Protocol

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CCA (SNU-478) cell line was obtained from the Korean Cell Line Bank (KCLB; Seoul, Republic of Korea). The SNU-478 cells were maintained in Roswell Park Memorial Institute (RPMI) 1640 (Welgene, Gyeongsan, Republic of Korea), supplemented with 10% fetal bovine serum (FBS; R&D systems, Minneapolis, MN, USA), 1% antibiotic-antimycotic solution (Welgene) and 1% HEPES buffer solution (Welgene) in a humidified incubator with 5% CO2 at 37 °C. When the cell density was 70–80%, trypsinization was performed using 0.25% trypsin (Welgene). AMG, isolated from the stem of Vitis amurensis, according to the procedure previously described [13 (link)], was kindly provided by Prof. Dr. Yeon Hee Seong (Laboratory of Pharmacology, College of Veterinary Medicine, Chungbuk National University, Cheongju, Republic of Korea). Gemcitabine was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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2

Culturing N2a Neuroblastoma Cells

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The N2a mouse neuroblastoma cell line (ATCC, Manassas, VA, USA) was used in this study. The N2a cells were cultured in minimal essential medium (MEM; Welgene, Daegu, Korea) containing 10% fetal bovine serum (FBS; Thermo Fisher Scientific, Waltham, MA, USA) and 1% penicillin (Welgene, Daegu, Korea) at 37 °C in 5% CO2. The N2a cells were passaged using 0.05% trypsin (Welgene, Daegu, Korea) twice a week and used between passages 15 to 25. The medium was changed daily. The mycoplasma was detected using the MycoAlert Mycoplasma Detection Kit (Lonza, Rockland, ME, USA), according to the manufacture’s protocol (Figure S1).
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3

Anti-inflammatory Signaling Pathways

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IPA (Figure 1A) was provided by Dr. Young-Ho Kim (Chungnam National University, Daejeon, Korea). Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), penicillin–streptomycin, and trypsin were purchased from Welgene (Gyeongsan, Korea). STO-609, zinc protoporphyrin IX (ZnPP), ML385, and LPS were purchased from Sigma-Aldrich (St. Louis, MO, USA). Compound C were obtained from Tocris (Cookson, Bristol, UK), and EDTA was purchased from GenDEPOT (Barker, TX, USA). W7 was obtained from Calbiochem (La Jolla, CA, USA). Antibodies against p-NF-κB p65, p-IκB, IκB, p-AMPK, p-CaMKKβ, p-GSK3β(Ser9), and p-LKB1 were from Cell Signaling Technology (Beverly, MA, USA). Antibodies against NF-κB p65, HO-1, NOQ1, Nrf2, and β-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Lamin B1 was purchased from Bioss Antibody, Inc. (Woburn, MA, USA). Tetrazole 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) was acquired from USB Corporation (Cleveland, OH, USA). The cytotoxicity assay kit was obtained from Roche Applied Science (Indianapolis, IN, USA). All other chemicals were of the highest grade commercially available.
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4

Melanogenesis Inhibition Assay

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Tyrosinase from mushroom (T3824-25KU, tyrosinase activity 7164 unit/mg solid), L-3,4-dihydroxyphenlyalanine (L-DOPA, D9628), 3-(4-Hydroxyphenyl)-L-alanine (L-tyrosine, T3754), 5-hydroxy-2-(hydroxymethyl)-4H-pyran (kojic-acid), Arbutin and α-Melanocyte Stimulating Hormone (α-MSH, M4135) were purchased from Sigma Aldrich (St, Louis, US). Dulbecco modified Eagle medium (DMEM), Fetal Bovine Serum (FBS), Phosphate Buffered Saline (PBS), and Trypsin were purchased from WELGENE (Gyeongsangbuk-do, Korea). Cell Viability Assay Kit (EZ-Cytox) was purchased from DOGEN (Seoul, Korea).
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5

Isolation and Culture of Human Cardiac Fibroblasts

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We used commercial human adult ventricular cardiac fibroblasts (HCF-av, Cat #6310; ScienCell, San Diego, CA, USA). Cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM; Welgene, Gyeongsan, Korea) with fetal bovine serum (10%; Welgene) and penicillin-streptomycin solution (100×; GenDEPOT, Barker, TX, USA) in an incubator with a humidified atmosphere of 5% CO2 and 95% air at 37°C. Confluent fibroblasts were detached by incubation with trypsin (0.25%; Welgene) and ethylene diamine tetraacetic acid (0.02%) in DMEM for several minutes. The detached cells were pelleted by centrifugation and then the supernatant was removed. The pellet was suspended in 1 mL of bath solution and the cells used in this study. Only cells in early passages (P4 to P7) were used to limit possible culture variation. Passage (P) is the number of times the cells are processed with trypsin and transferred to another flask.
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6

Isolation of Rat Primary Astrocytes

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Primary astrocytes were isolated from the cerebral cortices of Sprague Dawley (SD) rats on postnatal days (PND) 1–2 (Daehan Biolink Co. Ltd., Chungbuk, Korea). Briefly, cortices were dissected and chopped in ice-cold Hanks’ balanced salt solution (HBSS) buffer (Welgene Inc., Daegu, Korea). To isolate cells from debris, tissues were then treated with 0.25% trypsin (Welgene Inc., Daegu, Korea) for 30 min at 37 °C, washed with HBSS, mechanically dissociated, and plated in Dulbecco’s modified Eagle’s medium/nutrient mixture F-12 (DMEM/F12; Gibco, Waltham, MA, USA) medium containing 10% fetal bovine serum (FBS; Welgene, Daegu, Korea) on poly-L-lysine coated plates. Cultures were maintained under the same conditions and used for experiments after 14–18 days in vitro.
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7

Evaluating Bioactive Compounds in Cell Viability

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RPMI 1640 medium, fetal bovine serum (FBS), Dulbecco’s phosphate-buffered saline (DPBS), penicillin-streptomycin solution, and trypsin-ethylenediaminetetraacetic acid (EDTA) (WELGENE, Daegu, Korea); thymidylate synthase (TS, Cell Signaling Technology, Danvers, MA, USA); cyclin-dependent kinase (CDK1), cyclin-dependent kinase 2 (CDK2), cyclin-dependent kinase 4 (CDK4), cyclin-dependent kinase 6 (CDK6), cyclin A, cyclin B1, cyclin D1, cyclin E (Santa Cruz Biotechnology, Dallas, TX, USA); β-actin (Thermo-Fisher Scientific, Waltham, MA, USA); a water-soluble tetrazolium salt (WST)-8-based cell viability assay kit (DoGen, Seoul, Korea); bovine serum albumin (GenDEPOT, Katy, TX, USA); secondary horseradish peroxidase (HRP)-conjugated antibodies (GeneTex, Inc., Irvine, CA, USA); n-butanol (J.T. Baker, Mexico City, Mexico); berberine, palmatine, coptisine, and jatrorrhizine (Avention, Incheon, Korea).
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8

Piperlongumine and Oxidative Stress Regulation

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Dulbecco’s modified Eagle medium (DMEM), fetal bovine serum (FBS), penicillin/streptomycin antibiotic solution, and trypsin were obtained from Welgene (Gyeongsan, Korea). Phosphate-buffered saline (PBS) was purchased from Lonza (Basel, Switzerland). Piperlongumine was obtained from INDOFINE Chemical Company, Inc. (Hillsborough Township, NJ, USA). N-acetylcysteine (NAC), trypan blue solution, and 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were obtained from Amresco (Solon, OH). Dimethyl sulfoxide (DMSO) and 2′, 7′-dichlorofluorescin diacetate (DCFH-DA) were purchased from Sigma (St. Louis, MO, USA). An NF-κB inhibitor (Bay 11-7082), and antibodies against cyclin D1, CDK4, CDK6, proliferating cell nuclear antigen (PCNA), NF-κB p65, IκBα, lamin B, glyceraldehyde 3-phosphate dehydrogenase (GAPDH), goat anti-rabbit IgG-HRP, and donkey anti-goat IgG-HRP were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against cyclin B1, p-CDK1, and p-IκBα were obtained from Cell Signaling Technology (Danvers, MA, USA). IκB kinase-β antibody (IKK-β) was purchased from Abcam (Cambridge, MA, USA).
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9

Isolation and Culture of Human Submandibular Cells

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HSG cells isolated from human submandibular ducts and A253 cells derived from human squamous carcinoma in submandibular glands were cultured in Dulbecco's Modified Eagle's Medium (Welgene, Daegu, South Korea) supplemented with 10% fetal bovine serum (Welgene) and 1% penicillin/streptomycin (Gibco, Carlsbad, CA, USA) at 37°C in a humidified 5% CO2 incubator. Media change was done three times a week and sub-cultured when cells were approximately 80% confluent. 0.25% trypsin/1.0 mM ethylenediaminetetraacetic acid (Welgene) was used to detach cells from the culture dish. Primary cultured normal human fibroblast cells were obtained from biopsy sample of a patient. Normal tissue was submerged in 70% EtOH for 2 min for the sterilization and washed twice with PBS. Normal tissue was minced in HBSS and transferred to cell culture dish containing DMEM supplemented with 10% FBS and 1% penicillin/streptomycin, and incubated for 7 days. At the day 7 media and unattached cells were completely removed. Attached cells were split into four 100mm dishes and continuously subcultured or cryopreserved. Media was changed twice a week.
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10

Cytokine Quantification in Cell Lines

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Dulbecco’s Modified Eagle Medium (DMEM), trypsin, and fetal bovine serum (FBS) were purchased from Welgene (Gyeongsan, Republic of Korea). Streptomycin–penicillin was purchased from Gibco (NY, USA). Calcium-free DMEM, superscript™ IV first-strand synthesis system, and Dream taq Green PCR Mix were purchased from Thermo Fisher Scientific (MA, USA). TRIzol reagent was purchased from Invitrogen (CA, USA). Sodium dodecyl sulfate (SDS), dithiothreitol (DTT), agarose, lipopolysaccharide (LPS), ethyl ether, 1,1-diphenyl-2-picrylhydrazyl (DPPH), Griess reagent, NG-Methyl-l-arginine acetate salt (L-NMMA), and thiazolyl blue tetrazolium bromide (MTT) were obtained from Sigma Aldrich (St. Louis, USA). Reagent set B, cytokine IL-6 and IL-8 ELISA sets used for immunoassay were purchased from BD Biosciences (NJ, USA). TI was acquired in a previous study [31 (link)].
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