The largest database of trusted experimental protocols

Vertical electrophoresis system

Manufactured by Bio-Rad
Sourced in United States

The Vertical electrophoresis system is a laboratory equipment designed for the separation and analysis of macromolecules, such as proteins and nucleic acids, using the technique of vertical gel electrophoresis. The system allows for the efficient and consistent separation of these biomolecules based on their size and charge characteristics.

Automatically generated - may contain errors

10 protocols using vertical electrophoresis system

1

Quantitative Characterization of Peptide-Protein Conjugation

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect whether the A6 peptide was successfully linked to HSA, coomassie brilliant blue staining was used to qualitatively determine the difference in the molecular weight of HSA after modification. SDS-PAGE was performed using a Bio-Rad vertical electrophoresis system at 80 V for 30 min, which was subsequently changed to 120 V for 50 min. After electrophoresis, the SDS-PAGE gel was washed 3 times with double-distilled water to remove the residual SDS from the gel surface. Then the gel was incubated with coomassie blue fast staining solution for 2 h at room temperature. Subsequently, bright and clear bands were obtained after being washed with double-distilled water to remove the background color.
Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) was used to quantitatively examine the modification of A6 peptide linked to HSA through SMCC. The freeze-dried samples were re-dissolved in TA50 (0.1% trifluoroacetic acid (TFA): acetonitrile = 1:1). The mass spectra of HSA modified by different degrees of A6 peptide was acquired in a mass range between 30,000 Da and 200,000 Da.
+ Open protocol
+ Expand
2

Zea mays Seed Protein Extraction and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein was extracted from the developing Zea mays seeds according to the protocol described in [45 (link)]. SDS-PAGE was performed using a Vertical Electrophoresis System (Bio-Rad, Shanghai, China). Proteins were separated in SDS-PAGE on 10% acrylamide gels. Anti-rabbit antibodies (ZmPHO1) were generated according to the protocol described in [28 (link)]. After electrophoresis, the proteins in polyacrylamide gels were transferred to nitrocellulose membranes using an Electrophoretic Transfer Cell (Bio-Rad). The transfer buffer contained 10% running buffer, 20% methanol, and 70% water. After this membrane was incubated in blocking buffer (5% solution of skim milk in 1% TBST) for one hour on a rotator and then incubated overnight at 4 °C. A 15 µL quantity of ZmPHO1 antibody (affinity pure antibody) was added with (Anti-PHO1) 1:1000 dilution in blocking buffer, then incubated for 1 h on rotator at room temperature. The gel membrane was washed three times for 10 min each in 1% TBST. HPR secondary binding antibody Rabbit IgG was added with 1:2000 dilution in blocking buffer. The gel membrane was incubated for one hour. The gel membrane was washed three times for 10 min each in 1% TBST. A resolving solution was added according to the company or manufacturer’s instruction to photograph the bands’ results.
+ Open protocol
+ Expand
3

Quantifying Cellular Protein Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
We determined the expression of FTH1 and NRF2 proteins via Western blot analyses. Briefly, protein lysates were prepared from cultured cells or mouse tumor tissue using an ice-cold cell lysis buffer (ThermoFisher, United States) supplemented with a protease inhibitor cocktail (Roche, Switzerland). Equal amounts of proteins were separated by 12% SDS polyacrylamide gels using a vertical electrophoresis system (Bio-Rad, United States), and then proteins were transferred to PVDF membranes (Millipore, United States) using semi-dry transfer (Bio-Rad). After blocking with 5% BSA, the membranes were incubated with primary antibodies, including FTH1 (CST, 1:1000), NRF2 (Abcam, 1:1000) or GAPDH (Abcam, 1:10000), at 4°C overnight, followed by incubation with secondary antibodies for 1 hour at room temperature. Protein levels were detected using ChemiDoc XRS + Imagine System (Bio-Rad, United States), while data were analyzed using the Image Lab software.
+ Open protocol
+ Expand
4

SDS-PAGE Separation of Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Electrophoretic separation of protein factions between 10 and 150 kDa was performed in presence of SDS using Laemmli [19] (link). Concentrations of polyacrylamide in stacking and resolving gels were 4 % and 10 % respectively. Electrophoresis was performed with vertical electrophoresis system (Bio-Rad, USA) by applying electric current of 19 mA and 36 mA to stacking and resolving gels respectively. After separation, protein bands were fixing for 10 min by a mixture of 7.5 % acetic acid and 37.5 % isopropanol. Gels were staining on automatic shaker for 15 min by a mixture of 2.5 % Coomassie Brilliant Blue G-250, 10 % ethanol, 10 % acetic acid and 15 % isopropanol. Excess dye was removed from gels by boiling in 2–8 % acetic acid.
+ Open protocol
+ Expand
5

Surimi Gel Protein Profile Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
According to the study of Laemmli (1970) (link), the protein profile of surimi gel was analyzed by SDS-PAGE. First, 27 mL of SDS solution (85 °C) was added to the minced gel (3.0 g) to dissolve the total protein from the surimi gel. After incubation at 85 °C for 1 h, the mixture was centrifuged at 3,500 g for 20 min to remove undissolved material. The extracted protein was loaded onto the 4%–20% mini precast PAGE gel (Beyotime Biotechnology, China) in a volume of 12 μL and then run at 15 mA, 120 V for about 1 h using a vertical electrophoresis system (Bio-Rad Laboratories Inc., USA). Finally, coomassie bright blue R-250 staining was used for 1 h before decolorizing with ethanol and acetic acid.
+ Open protocol
+ Expand
6

Pancreatic Cancer Tissue Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumor tissues were collected from 21 patients with pancreatic cancer who were treated in our center from 2014 to 2016. Informed consent was obtained from the patients and their families, and the ethics committee had approved the study of our center. Human pancreatic cancer PANC-1 cell lines were purchased from ATCC, USA; RPMI-1640, trypsin, and fetal bovine serum (FBS) were purchased from Gibco, USA; Trizol and Lipofectamine 2000 were purchased from Invitrogen, USA; reverse transcription kits were purchased from TaKaRa, Japan; Cell Counting Kit-8 (CCK-8) was purchased from DOJINDO, Japan; RIPA lysate was purchased from Solarbio (Beijing, China); Annexin V-EGFP Apoptosis Staining/Detection Kit was purchased from BestBio, Shanghai, China; E-cadherin, N-cadherin, Vimentin, Caspase-3, Caspase-9, PCNA, SOX2, OCT4, and GAPDH antibody were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA); Ki67 was purchased from Abcam; HRP-labeled goat anti-mouse and HRP-labeled goat anti-rabbit secondary antibodies were purchased from Bioss, Beijing, China. GenePharma, Shanghai, China synthesized the primers. The cell incubators were bought from Thermo, USA, the vertical electrophoresis system was bought from Bio-Rad, USA, and the flow cytometers were purchased from BD, USA.
+ Open protocol
+ Expand
7

SDS-PAGE Analysis of Crude Venoms

Check if the same lab product or an alternative is used in the 5 most similar protocols
First, the venoms were pretreated in reducing conditions using 5% β-mercaptoethanol. An amount of 20 µg of crude venom was diluted in loading buffer under reducing conditions (b-mercaptoethanol, 2-ME) and loaded on 12% SDS-polyacrylamide gel [17 (link)]. The molecular weights were estimated by comparing the venom protein bands with protein markers (14.4–97 kDa) (Bio-Rad, Hercules, CA, USA). Each sample was boiled for 5 min and 120 V was applied for 60 min using a vertical electrophoresis system (Bio-Rad). After separation, the gels were stained with Coomassie blue R-250 for 2 h and rinsed with 40% methanol and 10% acetic acid.
+ Open protocol
+ Expand
8

Western Blot Analysis of Epithelial-Mesenchymal Transition

Check if the same lab product or an alternative is used in the 5 most similar protocols
Equal amounts of proteins collected from different kinds of cell lysates were loaded on 10% SDS polyacrylamide gels using a vertical electrophoresis system (Bio‐Rad, Hercules, CA, USA) and then transferred onto PVDF membranes. The PVDF membranes were incubated with antibodies against Snai1, vimentin and E‐cadherin (1:1000) overnight at 4°C and then washed and incubated with a secondary antibody. The membranes were washed again and transferred to freshly made ECL solution (Millipore), followed by observing signals using the ChemiDoc XRS + Imagine System (Bio‐Rad). ImageJ software (National Institutes of Health) was used to quantify and compare the intensity of single band between the control and proteins of interest.
+ Open protocol
+ Expand
9

Quantitative Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
After lysed in lysis buffer, cells were transferred to Eppendorf tubes. Bovine serum albumin (BSA) standard dilution buffer was diluted to 500 μg/mL and used to determine the standard curve of protein concentration. The tested sample was added to the 96-well plate and used for colorimetric reaction. Bio-Rad vertical electrophoresis system was used for cataphoresis. After adding the first antibody and the second antibody, chemiluminescence detection kit was used for chemiluminescence protein detection.
+ Open protocol
+ Expand
10

Protein Expression Analysis in Brain Regions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were decapitated after behavioral examinations. Related brain anatomical zones, specifically the prefrontal cortex and the hippocampus, were dissected. They were homogenized in lysis buffer and centrifuged at 12,000 rpm for 20 min at 4°C for protein measurement. The extracted total proteins (40 μg) were separated on 6, 10, or 15% SDS polyacrylamide gels using a vertical electrophoresis system (Bio-Rad, United States) and then transferred onto a nitrocellulose filter (NC) membrane using an electroblotting device (Bio-Rad, United States). The membranes were blocked for 1.5 h at room temperature with 2.5% BSA in TBST and then incubated with appropriate antibodies overnight at 4°C. The blots were incubated with peroxidase-conjugated secondary antibodies for 60 min at room temperature and visualized by enhanced chemiluminescence using a multifunctional chemiluminescence imaging system. The results of the Western blot analysis are representative of at least three experiments.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!