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4 protocols using dynabeads

1

Isolation and Characterization of Mouse Liver Endothelial Cells

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Isolation of endothelial cells was performed according to the method of Sobczak et al. [17] with the following modifications: livers were harvested from adult mice, the liver digest was purified by removal of macrophages with Dynabeads (Invitrogen, Grand Island, NY) coated with anti-CD16 antibody (BD Bioscience, San Jose, CA) for 20 minutes at room temperature, and positive selection was performed by incubation with anti-CD31 (BD Bioscience) coated Dynabeads for one hour at 4°C.
Endothelial cells were grown to 80% confluence in EGM-2 medium (Lonza, Walkersville, MD). They were then washed in PBS and disassociated with Accutase (Invitrogen). Cells were resuspended with in EGM with 5% FBS, and centrifuged at 150 g for 5 minutes. The pellet was then resuspended in FACS buffer (PBS, 5% FBS, 0.1% sodium azide, 2 mM EDTA) at a concentration of 500,000 cells per mL. 100 µL of cells were incubated with periodic agitation with 1 µL of fluorochrome-conjugated anti Flk-1 and PDGFRβ antibodies (BD Bioscience) for 45 minutes at 4°C. The cells were then washed twice with FACS buffer and resuspended in a final volume of 200 µL. Flow cytometry was performed using a MACSQuant Analyzer (Miltenyi Biotec, Bergisch Gladbach, Germany).
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2

Screening and Expansion of T Cells

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Screening of the gRNAs was performed by Editas Medicine. Genomic sequences targeted by the gRNAs are indicated in Appendix Table S6. For the screening, different culture conditions from those reported above have been used. Briefly, T cells were stimulated using Dynabeads (ratio cell:bead 1:1) and maintained in X‐Vivo 15 medium (Lonza), supplemented with Human AB Serum, IL‐7 (5 ng/ml), IL‐15 (5 ng/ml), and IL‐2 (100 IU/ml; Proleukin, Novartis Pharma). Dynabeads were removed after 2 days of culture. After 3 days of stimulation, cells were edited and expanded in the same medium, but with a lower IL‐2 concentration (50 IU/ml).
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3

Generation of CAR-T Cells Expressing CD19, GD2, and EGFR Targets

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The CD19-BBζ CAR consisting of a CD8 hinge, 4–1BB costimulatory domain, and CD3ζ signaling domain was generated as previously described (21 (link)). PBMCs were stimulated with Dynabeads (3:1 ratio) and then plated in 24-well plates in X-Vivo medium (Lonza, Morristown, New Jersey) containing IL-2 (200 IU/mL), IL-7 (10 ng/mL), IL-15 (5 ng/mL), and IL-21 (5 ng/mL) at 0.5 × 106 cells/mL. Three days later, T-cells were transduced using a lentiviral vector expressing the CAR construct, as described elsewhere (22 (link)).
Generation of the GD2-E101K CAR lentiviral plasmid was previously described (23 (link)). The CAR contains the 14G2a scFv, as well as an EF1α promoter, CD8 hinge, 4–1BB costimulatory domain, and CD3ζ signaling domain. The anti-EGFR CAR, with 3C10 scFv, was previously described (24 ). The CAR contains the 3C10 scFV, as well as an EF1α promoter, CD8 hinge, 4–1BB costimulatory domain, and CD3ζ signaling domain.
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4

Generation of Induced Regulatory T Cells

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Human CD4+CD25loCD45RAhi naive T cells were flow sorted from the PBMCs of healthy donor using BD FACSAria II (BD Bioscience). Cells were differentiated into induced Treg (iTreg) using anti-CD3/CD28 DynaBeads at a 1:4 bead-to-cell ratio in cell culture media [X-VIVO (Cat# 04–418Q, Lonza), supplemented with 10% FBS (Cat# 10100147C, GIBCO), 1% L-Glutamine-100X (Cat# 335050061, GIBCO), 1% MEM Non-Essential Amino Acids-100X (Cat# 11140050, GIBCO), 1 mM sodium pyruvate (Cat# 11360070, GIBCO), 1% Antibiotic-Antimycotic 100x (Cat# 15240112, GIBCO)],
100 U/mL rhIL-2 (Cat# 200–02, Peprotech) and 5 ng/mL hTGF-β1 (Cat# 7754-BH-100/CF, R&D). After 5 days of culture, cells were characterized by intracellular flow cytometry for Foxp3 expression.
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