The largest database of trusted experimental protocols

9 protocols using 3 3 diaminobenzidine (dab)

1

In situ H2O2 Detection in Plants

Check if the same lab product or an alternative is used in the 5 most similar protocols
In vivo H2O2 production in plants was detected by an endogenous peroxidase-dependent in situ histochemical staining procedure using DAB (Bio Basic Inc., Shanghai, China) [32 (link)]. The first detached leaves from 7-day-old seedlings after Bgt infection were stained with 1 mg/mL DAB dissolved in NaOH-acidified (pH 3.8) distilled water overnight, then discolored in boiling 95 % ethanol for 10 min, stored in 50 % glycerol. Representative phenotypes were captured with an Olympus microscope (MVX10, Olympus, Japan).
+ Open protocol
+ Expand
2

Western Blot Protein Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Expressed proteins were transferred to 0/2 μm pore size nitrocellulose membrane (Sigma-aldrich) at 100 mA for 3 hr and detected with Horseradish Peroxidase conjugated anti His-tag antibody (Sigma-aldrich) and visualized by DAB (BIO BASIC) staining method.
+ Open protocol
+ Expand
3

Western Blot Analysis of Wound Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Wound tissues (0.2 g) were harvested and lysed in 2 mL of ice-cold lysis buffer with 2 mmol/L PMSF, 100 mmol/L Na4P2O7, 50 mmol/L HEPES, 10 mmol/L EDTA, 100 mmol/L sodium fluoride, 10 mmpl/L sodium orthovanadate, and protease inhibitor mixture for 15 min. Lysate was centrifuged at 13,000 g for 20 min at 4°C. Proteins denatured in supernatants were electrophoretically separated on an 8% stacking gel and following 12% sodium dodecyl sulfate-polyacrylamide gel and then transferred to 0.2-μm nitrocellulose membranes. The membranes were blocked in TBS-T (10 mmol/L Tris, 150 mmol/L NaCl, and 0.1% Tween 20, pH 7.5) with 5% nonfat milk for 2 hours at room temperature and incubated with rabbit polyclonal antibodies β-actin (1 : 1000), CYP-5 (1 : 1000) (Bio Basic Inc., Canada), HO-1 (1 : 300), TNF-α (1 : 400), IL-6 (1 : 400), CBS (1 : 400), and CSE (1 : 400) (Wuhan Boster Bioengineering Limited Company, China) in TBS-T with 5% nonfat milk overnight at 4°C. After the membranes were extensively washed, a horseradish peroxidase-conjugated secondary anti-rabbit antibody (1 : 10 000 dilution; Sigma Chemical Co., St. Louis, MO, USA) was added and incubated for 2 hours. After being rinsed three times, the membranes were visualized by DAB (Bio Basic Inc., Canada).
+ Open protocol
+ Expand
4

Quantifying Hydrogen Peroxide and Superoxide

Check if the same lab product or an alternative is used in the 5 most similar protocols
The detection of H2O2 using 3,3′-diaminobenzidine (DAB, Biobasic) and superoxide ions using nitrotetrazoluim blue chloride (NBT, SRL) was performed as per the method described93 (link) in flag leaf pieces. The concentration of H2O2 in flag leaf and spikelets were determined by the Amplex Red Hydrogen peroxide/peroxidase assay kit (Invitrogen) as per the manufacturer instructions. Tissue was ground in liquid nitrogen and 30 mg of powder was used for the assay. The fluorescence (excitation at 560 nm and emission at 590 nm) was measured using Infinite M 200 PRO microplate reader (Tecan).
+ Open protocol
+ Expand
5

Protein Expression Analysis in Granulation Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Granulation tissues were homogenized and lysed in ice-cold lysis buffer (20 mmol/L Tris-HCl, 150 mmol/L NaCl, 1 mmol/L EDTA, 1 mmol/L EGTA, and 1% Triton X-100) containing protease inhibitors (2 mmol/L sodium orthovanadate, 0.2 mmol/L PMSF, 2 μg/mL leupeptin, and 2 μg/mL aprotinin). After centrifuged at 13 000 g for 15 minutes at 4°C, the supernatant was collected. Equal amounts of denatured proteins in the supernatants were separated by 12% SDS-PAGE, and transferred to nitrocellulose membranes. Then the membranes were blocked in TBS-T (10 mmol/L Tris, 150 mmol/L NaCl, and 0.1% Tween20, pH 7.5) containing 5% skim milk for 2 hours. The membranes were incubated with rabbit polyclonal antibodies β-actin, COX-2, VEGF, FGF-2, ERK1/2, p-ERK1/2, Akt, and p-Akt (1: 500) (Bio Basic Inc., Canada) in TBS-T with 5% nonfat milk overnight at 4°C. After the membranes were incubated with anti-rabbit HRP-conjugated antibody (1: 10 000) in TBS-T, target proteins were determined via visualization with DAB (Bio Basic Inc., Canada).
+ Open protocol
+ Expand
6

SDS-PAGE and Western Blotting Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were separated by 15% SDS–PAGE, according to Laemmli procedure under denaturing and reducing conditions [16] (link). For western blotting, the samples were run on SDS-PAGE and transferred onto a nitrocellulose membrane (Millipore-USA). The membrane subsequently was treated with anti-His His-tag monoclonal antibody (Sigma-USA) conjugated with horseradish peroxidase enzyme with 1:2000 dilution in PBS buffer containing 3%  W/V skimmed milk. Detection of proteins was done using a solution of DAB (Biobasic-Canada) and hydrogen peroxide as enzyme substrates [17] .
+ Open protocol
+ Expand
7

Immunoblotting Workflow for Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Twenty-four hours post-transfection, the cells were lysed using RIPA (Sigma-Aldrich), reconstituted with 100 mM Dithiothreitol and 1X Protease Inhibitor Cocktail (Sigma-Aldrich) in the ratio of 100:1:1. Subsequently the solution was centrifuged and the supernatant (total cell lysate, TCL) was collected and stored at −20 °C. Protein was estimated using Pierce BCA Protein assay kit (Fisher Scientific). 60 μg of TCL was loaded on the denaturing SDS-PAGE and was run at 80–100 V in Tris-Glycine Running Buffer. Proteins were transferred onto a 0.2 μm PVDF membrane (MDI) overnight at 30 V. The blot was checked with Ponceau S (USB) to confirm protein transfer and blocked using 1X NAP-Blocker (G-Bioscience) for four hours at room temperature, followed by overnight incubation in primary antibody (Supplementary Information) at 4 °C. Subsequently the blots were washed in 1X PBST, incubated in IgG-HRP conjugated secondary antibodies (Santa Cruz) for two hours at room temperature, again washed in 1X PBST and then developed in DAB (Biobasic). Images were analyzed with ImageJ software.
+ Open protocol
+ Expand
8

Evaluating Wheat Resistance to Powdery Mildew

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Bgt race E09, maintained on the susceptible wheat cultivar Kenong 199, was used to inoculate the seedlings of the six transgenic lines and the two negative controls (Stewart and TNS) at the four‐leaf stage as reported previously (Wang et al., 2014; Zou et al., 2018). At 72 hpi, 10 leaves were harvested from each inoculated line and subjected to microcolony staining using Coomassie Brilliant Blue R 250 (Wang et al., 2014). For each line, at least 2000 germinated Bgt spores were examined with three independent replicates, which were used to calculate the percentage of microcolonies formed from the total number of germinated Bgt spores. Bgt colonies developed in the infected leaves of the compared lines were photographed at 7 dpi. The Bgt inoculation experiment was repeated three times with highly similar results obtained.
Histochemical detection of H2O2 was carried out at 24 hpi of Bgt. For each of the 8 examined lines, 8 to 10 leaves detached from 4 different plants were stained with 3,3’‐diaminobenzidine (Bio Basic Inc., Shanghai, China) following the procedure described by Chen et al. (2016). The division of oxidative burst into three types was performed according to Wang et al. (2018). Two independent H2O2 detection experiments were accomplished with highly similar findings made.
+ Open protocol
+ Expand
9

Liver Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissues (0.2 g) were harvested, lysed and homogenized in 2 ml lysis buffer with 10 mM Tris-buffered saline, 1 mM EDTA, 1 mM EGTA, 2 mM PMSF and 1% Triton X-100 (v/v) for 20 min. Lysates were centrifuged at 13,000 × g for 15 min at 4°C. Protein concentration was measured using a Quick Start™ Bradford protein assay (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Denatured proteins in supernatants were separated by 10% SDS-PAGE and transferred onto nitrocellulose membranes. The membranes were blocked with 5% non-fat milk in TBS with Tween-20 (10 mM Tris-HCl, 150 mM NaCl and 1% Tween-20) for 2 h. The membranes were subsequently incubated with primary polyclonal antibodies against β-actin (1:1,000), heme oxygenase-1 (HO-1; 1:1,000), cyclooxygenase-2 (COX-2), nuclear factor (NF)-κB, phosphorylated (p)-NF-κB, extracellular signal-regulated kinase (ERK) and p-ERK1/2 (Bio Basic Inc., Markham, ON, Canada) overnight at 4°C. Following an extensive wash with TBST, the membranes were incubated with a horseradish peroxidase-conjugated goat anti-rabbit secondary antibody (1:10,000; cat. no. A9169; Sigma-Aldrich; Merck KGaA) for 2 h at room temperature. The membranes were washed three times and visualized with 3,3′-diaminobenzidine (Bio Basic Inc.).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!