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15 protocols using e cadherin

1

Single-Cell Isolation of Mouse Tumors

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KPC mouse tumors were digested and single cell suspensions were prepared as describe above for human tumors. Cells were resuspended in 2% FBS/PBS and blocked with anti-mouse CD16/CD32 Fc Block for 15 minutes at 4°C (Biolegend, clone 2.4G2, 1:50). The following antibodies were used in the different flow experiments (all from Biolegend at 1:200): CD45 (Clone 30-F11), CD31 (Clone 390), EpCAM (Clone G8.8), E-Cadherin (Clone DECMA-1), Podoplanin (Clone 8.1.1), CD140a (PDGFRα, Clone APA5), Ly6C (Clone HK1.4) and I-A/I-E (MHC class II, Clone M5/114.15.2). Staining with antibodies was performed for 30 minutes at 4°C. Prior to flow cytometry, DAPI was added to cell suspension (Sigma #D8417, 1 μg/ml). 250,000 events were acquired from each sample on the BD LSR Fortessa. Cell sorting was done on the FACSAria II (CSHL), using the same antibodies as indicated for flow. Sorted cells were collected into 10% FBS/DMEM at 4°C.
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2

Quantification of TrxR1, CD44, E-Cadherin, and N-Cadherin Levels in Cells

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Cells were seeded at a density of 2 × 104/well on 4-well Lab-Teck II chamber slides (Nunc, Naperville, IL, USA). After indicated treatment, cells were washed twice with ice-cold PBS and fixed immediately with 4% paraformaldehyde in PBS for 15 minutes at room temperature. After two washes with PBS, cells were permeabilized with 0.25% Triton X-100 for 10 minutes at room temperature. Then cells were blocked with 1% bovine serum albumin (BSA) in PBS/Tween 20 for 30 minutes at room temperature and further incubated overnight with the primary antibodies against TrxR1 (Abcam, 1:300), CD44-PE (eBioscience, 1:160), E-Cadherin (BioLegend, 1:300) or N-Cadherin (Biolegend, 1:300) diluted in 1% BSA in PBS/Tween 20 in a humidified chamber at 4 °C. After three rinses with PBS, secondary antibodies conjugated with Dylight 488, Dylight 649 or Dylight 549 (Abbkine, 1:300) diluted in 1% BSA in PBS/Tween 20 (1:200) was added and incubated for 1 hour at room temperature in dark followed by three washes with PBS. Subsequently, nucleus were counterstained with 4′,6′-diamino-2-phenylindole (DAPI) for 10 minutes. Images were taken with a laser scanning confocal microscope (Nikon A1, Japan) and analyzed by NIS-Elements Viewer 4.20 software.
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3

Flow Cytometry Analysis of MSCs

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The expression levels of cell surface proteins were determined by flow cytometry. Adherent cells were harvested by trypsin/EDTA (0.05%/0.02%), centrifuged, washed and resuspended in phosphate-buffered saline (PBS) containing 1% bovine serum albumin (BSA). In order to evaluate the expression of intercellular adhesion in MSCs, aliquots of 1.0 × 106 cells were incubated with phycoerythrin (PE)-conjugated antibodies, CD49d (12–0499-73, eBioscience), CD106 (561679, BD Pharmingen) or PE antihuman CD324 (E-Cadherin; 324105, BioLegend) and corresponding isotype controls for 30 min before washing with PBS. Antibodies for MSC characterization were all purchased from BioLegend, which were fluorescein isothiocyanate (FITC)-conjugated monoclonal antibodies against CD45 (304005), CD34 (343503) and HLA-DR (307603) and allophycocyanin (APC)-conjugated antibodies against CD73 (344005), CD105 (endoglin; 323207) and CD90 (328113). All samples were analyzed by an EPICS XL flow cytometer (Beckman Coulter GmbH, Krefeld, Germany).
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4

Characterization of Cellular Surface Markers

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HTR8/SVneo, JEG3, JAR and BeWo cells were treated with trypsin and transferred into plastic tubes after cultured at a density of 2×105 cells/well in 6-well microplates for 48 h. Cells were fixed in 4% paraformaldehyde for 20 min at room temperature, washed in PBS and permeabilized for 20 min in 0.1% Triton X-100-PBS. They were then washed and suspended in PBS, incubated with ST2-allophycocyanin-labeled antibodies (R&D Systems, Inc., Minneapolis, MN, USA) for 30 min at room temperature. Next, cells were washed and suspended in PBS, and immediately analyzed by four-color FCM using CellQuest Pro software, version 5.1 (FACSCalibur; BD Biosciences, Franklin Lakes, NJ, USA) with an isotypic control (BioLegend, San Diego, CA, USA).
JEG3 cells were cultured at a density of 2×105 cells/well in 6-well microplates, and treated with recombinant human (rh)IL-33 (at 0 and 1 ng/ml) for 48 h, then the expression of integrin α3β1, integrin α4β1, integrin α5β1, integrin α6β1 and integrin ανβ3 (R&D Systems, Inc.), CD44, CD62L and E-cadherin (BioLegend, Inc., San Diego, CA, USA) on JEG3 cells was evaluated by FCM.
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5

Immunohistochemical Analysis of Immune Cells

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Mice were euthanized at the desired time points and the spleen, LNs, liver and lung tissues were harvested. The tissue segments were immediately washed using PBS and embedded in Tissue-Tek® O.C.T compound (Sakura, Japan) for freezing. These samples were frozen using isopentane with dry ice and then sectioned at a thickness of 8 μm. The sections were air-dried and then fixed in acetone at –20°C for 10 min. Fixed samples were air-dried again and rehydrated using PBS containing 0.05% Tween 20 (PBST). The sections were blocked with a blocking buffer containing 10% normal donkey serum (Jackson ImmunoResearch, USA) and 1% bovine serum albumin (Sigma-Aldrich) for 1 h and then stained with the antibodies against LYVE-1, Ly5.1, B220, CD4, KLRG1, E-cadherin (Biolegend), and N-cadherin (Sigma-Aldrich). APC-conjugated streptavidin was additionally used for the detection of cells attached to a biotinylated antibody. Stained samples were washed three times using PBST and mounted with ProLongTMAntifade Mountant (Thermo Fisher Scientific, USA). Sample images were taken using a fluorescence microscope (Axio observer.A1; Carl Zeiss, Germany). The contrast and brightness of the images were compensated and normalized using Photoshop® CS6 (Adobe, USA) and Axio vision (Rel.4.8.2; ZEISS, USA). The number of TM cells in the T-cell zone were counted using ImageJ software (NIH, USA).
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6

Intracellular Cytokine Staining Protocol

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The cell staining procedure used in this study was described previously (Wu et al., 2018a (link)). For intracellular cytokine staining, the cells were restimulated for 12 h with 10 g/ml CagA (Linc-Bio Science, Shanghai, China), 10 μg/ml VacA (Linc-Bio Science, Shanghai, China), anti-CD3 mAb (Clone UCHT1, BD), anti-CD28 mAb (Clone CD28.2, BD) and 3 μg/ml brefeldin A (eBioscience, CA, USA). Intracellular cytokines were stained using the intracellular fixation/permeabilization buffer set (eBioscience, CA, USA). Flow cytometric analysis was performed on FACS Canto II (BD, NJ, USA), and the data were analyzed using FlowJo software (Tree Star). The following anti-human antibodies were purchased from eBioscience, BD Biosciences or Biolegend (CA, USA): CD3 (Clone UCHT1, BD), CD4 (Clone L200, BD), CD8 (Clone RPA-T8, BD), CD45RO (Clone UCHL1, BD), CD69 (Clone FN50, Biolegend), CD103 (Clone Ber-ACT8, Biolegend), CCR7 (Clone 150503, BD), CCR9 (Clone L053E8, Biolegend), CXCR3 (Clone 1C6/CXCR, BD), E-Cadherin (Clone DECMA-1, Biolegend), TNF (Clone MAb11, eBioscience), IFN-γ (Clone 4S.B3, eBioscience), IL-17a (Clone BL168, Biolegend), T-bet (Clone O4-46, BD), and Blimp1 (Clone 6D3, BD), ZAP70 Phospho (Tyr319) (Clone 1503310, Biolegend).
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7

Quantitative Protein Expression Analysis

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The protein expression levels were determined by Western blotting. The samples were re-labeled for a blind analysis before the Western blot processing. Equal amounts of protein extracts were separated using sodium dodecyl sulfate (SDS)-PAGE and then electrophoretically transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were incubated with the primary antibodies for E-cadherin (#866702), vimentin (#677802), α-SMA (#904601) (Biolegend, San Diego, CA, USA), p53 (#sc-126), p16 (#sc-377412), p21 (#sc-6246), β-actin (#sc47778), GAPDH (#sc25778) (Santa Cruz Dallas, TX, USA), catalase (#ab16731), superoxide dismutase 1 (SOD1; #ab13498), Klotho (#ab203576), CD68 (#ab125212), TNF-α (#ab183218) (Abcam, Cambridge, MA, USA), Ly6G (#14-5931-82) (eBioscience, San Diego, CA, USA), Bax (#14796), Bcl-2 (#3498), cleaved Caspase 3 (#9664), and CHOP (#2895) (Cell Signaling Technology, Danvers, MA, USA), followed by incubation with horseradish peroxidase-conjugated secondary antibodies (Bio-Rad, Hercules, CA, USA). The blot signals were measured using enhanced chemiluminescence substrates (Bio-Rad) and developed onto a Fuji Blue X-ray Film. ImageJ software was used to quantify the protein expression bands.
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8

Protein Expression Analysis by Western Blot

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Proteins in cells were resolved in lysis buffer which supplemented with 1 mM PMSF, and lysed for 15 min on ice. Briefly, collected the supernatant after centrifugation at 12,000×g for 10 min and diluted in 5×SDS-PAGE loading buffer (Biolegend, San Diego, CA), heated at 95 °C for 5 min and cooled on ice. Protein concentration of each sample was quantified by using of the BCA assay. Then these proteins were transferred onto the PVDF membrane (Bio-Rad, Hercules, CA) after separated. Then the membranes were blocked and reacted with first antibodies against CtBP2, E-cadherin, β-catenin, Vimentin (Biolegend, San Diego, CA) and β-actin (Abcam, Cambridge, MA) in a 4 °C refrigerator overnight. The β-actin was used for the purpose of an internal control. Following, the membranes were reacted with secondary HRP-conjugated antibody. The protein bands were visualized and imaged via chemiluminescence detection system (Tanon, Shanghai, China), and quantified by ImageQuant TL (GE healthcare life sciences, Pittsburgh, PA).
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9

Protein Characterization by SDS-PAGE and Western Blotting

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For protein characterization using sodium dodecyl sulfate polyacrylamide gel electrophoresis, all samples were prepared at a final protein concentration of 1 mg/mL in lithium dodecyl sulfate (LDS) loading buffer (Invitrogen) as measured by a BCA assay (Pierce). CM-fibers were rinsed in PBS and then disintegrated via soncation using a FS30D bath sonicator at a frequency of 42 kHz and a power of 100 W for 5 min. Samples were heated at 70°C for 10 min and 20 µL was loaded into each well of a NuPAGE Novex 4–12% Bis-Tris 10-well minigel (Invitrogen) in MOPS running buffer (Invitrogen) in an XCell SureLock Electrophoresis System (Invitrogen) following manufacturer’s instructions. Protein staining was accomplished using SimplyBlue (Invitrogen) and destained in water overnight before imaging. For western blot analysis, protein was transferred to Protran nitrocellulose membranes (Whatman) using an XCell II Blot Module (Invitrogen) in NuPAGE transfer buffer (Invitrogen) following manufacturer’s instructions. Membrane proteins were probed using antibodies against E-cadherin (147301, Biolegend) and Na+/K+-ATPase (A01483, GenScript) along with horseradish peroxidase (HRP)-conjugated anti-mouse IgG (Poly4053, Biolegend). Films were developed using ECL western blotting substrate (Pierce) and developed with the Mini-Medical/90 Developer (ImageWorks).
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10

Multicolor Flow Cytometry of Cell Adhesion

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Cells were stained with fluorochrome-conjugated monoclonal antibodies against N-cadherin (BioLegend) and E-cadherin (BioLegend) according to the manufacturer’s instructions, and they were subsequently analyzed by multicolor flow cytometry using Cell Quest software (FACS Verse, BD Immunocytometry Systems).
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