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15 protocols using fitc conjugated anti cd8

1

Brachyury-specific T-cell Characterization

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The brachyury agonist-specific T-cell lines were examined for antigen-specificity and perforin production. T cells (2×105) were stained with FITC-conjugated anti-CD8 (BD) and either a PE-conjugated agonist-specific tetramer (NIH Tetramer Core Facility, Atlanta, GA) or a negative control tetramer (Beckman Coulter, Fullerton, CA). Cells stained for perforin production were surface stained with FITC-conjugated anti-CD8 (BD), then permeabilized using a Fixation/Permeabilization kit (eBioscience, San Diego, CA) according to the manufacturer’s instructions. Cells then underwent intracellular staining with PE-conjugated anti-perforin antibody or isotype control (BD). In addition, T-cell lines were stained with CD8-V421 (BD), CD45RA-PerCP-Cy5.5 (eBioscience), CCR7-AF700 (R&D Systems, Minneapolis, MN), CD27-PE (BD), Perforin-APC (BioLegend, San Diego, CA) and Ki67-FITC (BD), and 1×105 cells were captured on an LSRII (BD) and analyzed using FlowJo 9.0.1 software (Tree Star Inc, Ashland, OR).
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2

Ginger Compound Modulates Immune Responses

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6-Gingerol (Sigma-Aldrich, St Louis, MO) was dissolved to 3.5 μg/ml of 50% ethanol and diluted with drinking water, as required (the final ethanol concentration was less than 0.01%). The following antibodies were purchased from BD Pharmingen, San Diego, CA: phycoerythrin- (PE-) conjugated anti-Ly6G, fluorescein isothiocyanate- (FITC-) conjugated anti-CD11b, PE-conjugated anti-CXCR2, FITC-conjugated anti-CD4, FITC-conjugated anti-CD8, PE-conjugated anti-IFN-γ, PE-conjugated anti-CD4, PE-conjugated anti-CD8, and FITC-conjugated antiannexin V antibodies. P. aeruginosa (ATCC27853) was obtained from the American Type Culture Collection (ATCC). For the M1 and M2 macrophage analysis, cells were separately stained with monoclonal antibodies specific for F4/80-PE from eBioscience; F4/80-FITC and CD206-PerCP/Cy5.5 from BioLegend, San Diego, CA; and CD80-FITC and iNOS-FITC from BD Transduction Laboratories, San Diego, CA. Bacteria were grown in brain heart infusion (BHI) media (Difco) at 37°C for 18 h, and aliquots were frozen at −80°C.
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3

Intracellular Cytokine Staining in Lung Cells

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After lung cell purification, intracytoplasmic cytokine staining was performed as previously described [26 (link), 27 (link)]. The cells were stained for cell surface markers with PE-conjugated anti-CD4 (BD Biosciences, Franklin Lakes, NJ, USA), FITC-conjugated anti-CD8 (BD Biosciences), or APC-conjugated anti-CD3 (BD Biosciences) and then analyzed using a MACS Quant flow cytometer (Miltenyi Biotec, Auburn, CA, USA) with FlowJo software (TreeStar, Ashland, OR, USA). The numbers of cytokine-producing CD4+ or CD8+ T cells per lung were calculated from the percentages of cytokine-producing cells and the numbers of CD4+ or CD8+ T cells isolated from the lung. The cells were also stained for cell surface markers with APC-conjugated anti-CD11b (BD Biosciences) and FITC-conjugated anti-CD11c (BD Biosciences).
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4

Immunopathological Analysis of Lymph Node Cells in EAMG

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In immunization-based EAMG models, antigens are injected subcutaneously to body parts that are in close proximity with the lymph nodes. As a result, immunopathogenic processes leading to antibody formation and muscle weakness predominantly occur in the local draining lymph nodes. Therefore, in our study, all immunopathological studies were conducted using lymph node cells. For this purpose, inguinal, popliteal, and axillary lymph node cells were collected at the termination of the experiment. Single-cell suspensions of lymph node cells were incubated for 30 min with one of the following anti-mouse antibodies: PE-conjugated anti-CD4, anti-CD19, anti-CD11b, and anti-CD3 and FITC-conjugated anti-CD8 (all from BD PharMingen). PE- or FITC-conjugated isotypes were used for controls. Cells were washed twice and then were fixed with 2 % paraformaldehyde and analyzed by flow cytometry (BD Biosciences).
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5

Detection of Antigen-Specific T Cells

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WHV-specific CD8+ and CD4+ T cells were detected by established methods described in previous publications [10 (link), 20 (link)]. Splenocytes in 96-well U-bottom plates were re-stimulated with individual peptides at a concentration of 2 μg/ml in the presence of brefeldin A (eBioscience, San Diego, CA) at 4 μg/ml for 5 h. All antibodies were purchased from Biolegend (San Diego, CA). Splenocytes were stained with fluorescein isothiocyanate (FITC)-conjugated anti-CD8 and phycoerythrin (PE)-conjugated anti-CD4, while dead cells were excluded by 7-AAD staining (BD pharmingen, NJ). For intracellular IFN-γ staining, cells were permeabilized by Fixation & Permeabilization kit (eBioscience) and stained with allophycocyanin (APC)-conjugated anti-IFN-γ (Biolegend). Data were analyzed using FACS Calibur (BD Biosciences, San Jose, CA) and FlowJo software (Treestar, Ashland, OR).
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6

Murine LAIR-1 Antibody Characterization

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Antibodies used for this study included: monoclonal anti-murine LAIR-1 antibodies, (Affymetrix/eBioscience, San Diego, Ca) and Armenian hamster IgG isotype control for the anti LAIR-1 (Biolegend, San Diego, Ca). The Abs used for flow cytometry included: PacBlue-conjugated anti-CD4, PE-conjugated anti-IL-2, APC-conjugated anti-IFN-γ, FITC-conjugated anti-CD8, APC-conjugated anti-CD19, FITC-conjugated anti-CD11c, APC-conjugated anti-CD11b, APC-conjugated anti-DX5, APC-conjugated anti-GR-1 (BD Biosciences, San Jose, CA) and PE-conjugated anti-murine LAIR-1 antibodies, (Affymetrix/eBioscience, San Diego, Ca). All were used according to the manufacturer’s recommendations.
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7

Immunophenotyping of T Cell Subsets

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Peripheral blood mononuclear cells were stained and separated into T cell subsets as previously described.6 Briefly, PBMCs were washed twice in PBS and labeled with the following fluorescent antibodies: APC‐H7‐conjugated anti‐CD3, FITC‐conjugated anti‐CD8, PE‐Cy7‐conjugated anti‐CD45RA, APC‐conjugated anti‐CD62L, BV421‐conjugated anti‐CD73, PE‐conjugated anti‐CXCR3 and PerCP‐Cy5.5‐conjugated anti‐CD95 (BD Biosciences, San Diego, CA, USA; Table S1). After incubation for 30 min at room temperature, labeled cells were analyzed using FACSAria II BD (BD Bioscience). Subsequently, CD8+CD73+CD45RA+ CD62L+CXCR3CD95 cells as the naive T cells (TN cells), CD8+CD73+CD45RA+ CD62L+CXCR3+ CD95 cells as the young memory T cells (TYM cells), CD8+CD45RA+CD62L+ CXCR3+ CD95+ cells as stem cell memory T cells (TSCM cells), CD8+CD45RACD62L+ cells as TCM cells and CD8+CD45RACD62L cells as TEM cells were sorted. Collected data were analyzed with BD FACSDiva V6.1.3 (BD Bioscience) and GraphPad Prism software version 7 (MDF, Tokyo, Japan). The gating strategy is depicted in Figure S1.
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8

OVA-specific CTL Generation

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Spleen cells from the mice about 7 days after the third immunization were separated by lymphocyte separation medium and resuspended. OVA-specific CTLs were generated by stimulating spleen lymphocytes with 50 μg/mL of OVA protein for 3 days. The cells were then stained by FITC-conjugated anti-CD8 (BD Biosciences) and PE-conjugated H-2Kb/OVA257–264 complex (MBL Co., Ltd., Nagoya, Japan). For intracellular cytokine staining, spleen T cells were incubated at a density of 2 × 106 cells per mL in complete RPMI 1640 containing 10 μg/mL OVA257–264 or OVA323–339 for 24 h, and added with Golgi Stop (BD Biosciences) during the last 4–6 h. The cells were then harvested and stained by anti-CD4-APC and anti-IFN-γ-PE or anti-CD8-FITC and anti-IFN-γ-PE (BD Biosciences). Fluorescence profiles were acquired on a FACScan flow cytometer (Becton Dickinson) and analyzed using CellQuest software.
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9

Immunophenotyping in Ischemic Heart Failure

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At the time of study enrollment, the patient characteristics were assessed; additionally, peripheral venous blood samples were taken and available for all study participants. All patients were enrolled in a stable condition free of any signs of congestion of acute cardiac ischemia. In patients presenting with ischemic HFrEF, the definition of heart failure was made at least 6 weeks after the acute ischemic event to overcome selection bias based on postinfarction myocardial stunning as recommended by the European Society of Cardiology [12 (link), 13 (link)]. Routine laboratory parameters were analyzed and processed according to the local standards of the Department of Laboratory Medicine of the Medical University of Vienna. In addition, cells from fresh EDTA blood samples were stained with APC-Cy7-conjugated Anti-CD4 (BD Biosciences, San Jose, CA, USA) and FITC-conjugated Anti-CD8. Regulatory T cells were identified via their intracellular forkhead-box protein P3 (Fox-P3) and CD25 expression using PE-conjugated Anti-Fox-P3 (BioLegend, San Diego, CA, USA) as well as APC-conjugated Anti-CD25 (BioLegend, San Diego, CA, USA) in a second FACS panel. Stained cells were analyzed using a BD FACS Canto II Flow Cytometer System and FACSDiva software.
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10

Analyzing Th17 and Th1 Cells in B-ALL

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The frequencies of Th17 cells and Th1 cells were analyzed as previously described [7 (link)]. Briefly, peripheral blood mononuclear cells (PBMCs) and bone marrow mononuclear cells (BMMCs) from B-ALL patients and healthy donors were stimulated with 40 ng/ml phorbol 12-myristate13-acetate (PMA) and 1 μg/ml ionomycin for 5 h in the presence of 1 μg/ml brefeldin A (BFA; all from Sigma-Aldrich, St.louis, MO, USA). The cells were subsequently surface stained with a combination of PerCP-conjugated anti-CD3 and FITC-conjugated anti-CD8, fixed and permeabilized and intracellularly stained with PE-conjugated anti-IL-17A and APC-conjugated anti-IFN-γ (all from BD Biosciences, San Jose, CA, USA). Stained cells were acquired and analyzed using CellQuest software on a FACSCalibur instrument (BD Biosciences).
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