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5 protocols using e coli m15 prep4

1

M. leprae Genomic DNA Expression

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The genomic DNA used in the study was isolated from M. leprae strain Thai 53, which was maintained at Leprosy Research Centre, National Institute of Infectious Diseases, Japan, as previously described [21 (link),22 (link)]. The pQE30 plasmid and E. coli M15 (pREP4) were purchased from Qiagen (Valencia, CA). The pQE30 plasmid was used as expression vector. E. coli M15 (pREP4) was used as a host for the vector, as recommended by the manufacturer.
The pMK90 plasmid and E. coli UT4400 were obtained from Dr. Riley (University of California at Berkeley, California, USA).
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2

Purification of 6xHis-OxyRC199S Protein

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For 6×His-OxyRC199S purification, plasmid pIZ1885 was transformed into E. coli M15 [pREP4] (Qiagen, Valencia, CA, USA). M15/pIZ1885 was grown in LB broth containing ampicillin, and expression of 6×His-OxyRC199S was induced with 1 mM isopropyl β-D-thiogalactopyranoside (IPTG). After 3 h of induction, cells were centrifuged and resuspended in 10 ml of lysis buffer (20 mM Tris, 300 mM NaCl, 10 mM imidazole) per g of pelleted cells, and were lysed by sonication. The suspension was centrifuged at 10 000 rpm for 30 min and the supernatant containing the soluble fraction of 6×His-OxyRC199S was transferred to a HisTrap HP nickel affinity chromatography column (GE Healthcare, Wauwatosa, WI, USA). The column was washed with 4 ml of lysis buffer, 4 ml of washing buffer (20 mM Tris, 300 mM NaCl, 30 mM imidazole) and 4 ml of the same buffer with 50 mM imidazole. Protein elution was performed with 3 ml of elution buffer (20 mM Tris, 300 mM NaCl, 300 mM imidazole). Elution fractions enriched in 6×His-OxyRC199S were selected and combined. Imidazole was removed by transferring to an Amicon® ultra centrifugal filter (Merck Millipore, Darmstadt, Germany) and washing with storage buffer (20 mM Tris, 300 mM NaCl, 10% glycerol) or by dialyzing in cellulose membranes (Sigma-Aldrich, St Louis, MO, USA). 6×His-OxyRC199S was either used immediately or frozen in liquid nitrogen and stored at −80ºC.
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3

Recombinant Protein Production and Purification

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The cDNAs encoding recombinant human Tag7 (GenBank accession number NM_005091) was subcloned in pQE-31 and expressed in E. coli М15 (pREP4) (Qiagen, Hilden, Germany). Tag7 was purified as described earlier [22 (link)]. The cDNAs for the recombinant human 70 kDa heat shock protein 1A (Hsp70) and human TNFα (GenBank accession numbers: NM_005345 and NM_000594, respectively) were subcloned into pQE-31 and expressed in E. coli M15 (pREP4) (QIAGEN, Hilden, Germany). Hsp70 and TNFα were purified on a Ni-nitrilotriacetic acid agarose column (QIAGEN Hilden, Germany) according to the manufacturer’s instructions.
Rabbit polyclonal antibodies to murine TNFR1 and soluble sTNFR1 were procured from Sigma Aldrich (St. Louis, Missouri, USA).
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4

Cloning of Antigen Genes

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pQE31 vector (Qiagen GmbH, Hilden, Germany) was used for cloning of antigen genes. Escherichia coli TOP10 (Life Technologies Inc., New York, USA) and E. coli M15 (pREP4) (Qiagen GmbH, Hilden, Germany) were used as intermediate and expression hosts, respectively. Luria Bertani (LB) broth and agar were used for routine culture of E. coli strains. When required, ampicillin (Amp) and kanamycin (Km) were added to culture media at final concentrations of 100 and 25 μg/ml, respectively.
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5

Cloning and Expression of Trout CCL4

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Trout CCL4 sequence (acc. number AY561709.1) was used to design specific cloning primers (Suppl. Table 1). The CCL4 full length was amplified from cDNA synthesized from trout head kidney total RNA purified using TriReagent (Sigma). The PCR product was excised from the gel, ligated into pET-30Xa/LIC vector (Novagen) and transformed into E. coli DH5α (Invitrogen). The CCL4-pET-30 Xa/LIC was then purified using the Nucleo-Spin Plasmid Quick-Pure (Macherey-Nagel), quantified using a Nanodrop ND-1000 (Thermo Scientific) and sequenced in order to check the sequence orientation.
Finally, for recombinant protein expression the CCL4-pET-30Xa/LIC was subcloned into E. coli BL21(DE3) pLysS strain. The bacterial strain used for the production of TNFα IBs was E. coli M15[pREP4] (Qiagen). This strain was transformed with the TNFα-pQE30 vector (Qiagen) as described [29] . CCL4-pET-30Xa/LIC and iRFP-H6-pET22b were transformed into E. coli BL21(DE3) for the recombinant production of IB CCL4 and infrared fluorescent protein, IB iRFP-H6 respectively. Note that IB iRFP-H6 were produced as control nanoparticles with irrelevant biological activity regarding immunostimulation. All the recombinant proteins contained a His-tag and could be detected by western blot using an anti-His tag antibody (GenScript).
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