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11 protocols using dylight 594

1

Immunofluorescence Visualization of Cellular Proteins

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Cells were fixed using 4% formaldehyde and permeabilized using 0.5% Triton X-100 (BioFroxx, Kronbergim Taunus, Germany). Samples were blocked using 5% bovine serum albumin (ComWin Biotech, Beijing, China) and incubated with primary antibody at 4 °C overnight, and a secondary antibody, DyLight 594 (Abbkine, Wuhan, China), for 1 h. Nuclei were counterstained using 4′,6-diamidino-2-phenylindole (DAPI) (Solarbio, Beijing, China) for 10 min. Images were captured during confocal microscopy.
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2

Immunofluorescence Analysis of DCL1 Localization

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Immunofluorescence was performed as described previously (71 (link)). For DCL1 immunofluorescence, inflorescence tissue of Col-0 WT and amiR-RH6/RH8/RH12 were fixed in 3% paraformaldehyde under vacuum for 15 min at room temperature. DCL1 antibody (72 ) was used as the primary antibody (1:150 dilution). Goat anti-rabbit antibody labeled with Dylight 594 (Abbkine, A23420) was used as secondary antibody (1:300 dilution). Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) at 1 μg/ml. Col-0 WT inflorescence was used as negative control.
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3

Immunofluorescence Characterization of HIF-1α and LOXL2 in DPSCs

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Immunofluorescence staining was conducted to characterize the expression and distribution of HIF-1α and LOXL2 in DPSCs. DPSCs were seeded on coverslips in 24-well plates (1.5 × 104 cells per well) and cultured at 37 °C overnight. The culture media were replaced with serum-free media and cells were cultured under normoxia or hypoxia for 48 h. Cells were fixed with 4% PFA for 20 min and permeabilized with 0.3% Triton X-100 in PBS for 10 min. After blockading in 10% goat serum for 1 h, cells were incubated overnight with primary antibodies against HIF-1α (1:100; Proteintech, Chicago, IL, USA) and LOXL2 (1:100; Abcam, Cambridge, UK) at 4 °C. The next day, after washing with PBS, cells were incubated with fluorescein-conjugated goat anti-mouse antibody (1:200, DyLight 488; Abbkine, Redlands, CA, USA) and goat anti-rabbit antibody (1:200, DyLight 594; Abbkine, Redlands, CA, USA) at room temperature for 1 h. Finally, nuclei were counterstained with DAPI (Beyotime, Shanghai, China) for 5 min. Images were captured with a confocal microscope (Olympus, Tokyo, Japan) and fluorescent quantitative analysis was performed with ImageJ software.
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4

Immunostaining of Ribosomal Proteins

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K150 cells (1 × 104) were seeded onto coverslips in 48-well plates, incubated overnight, fixed with methanol for 20 min, permeabilized with 0.2% Triton X-100 in phosphate-buffered saline (PBS) for 20 min, blocked at room temperature for 1 h with 5% goat serum (Zhong Shan Golden Bridge Biological Technology, Beijing, China), incubated at 4 °C overnight with antibodies against ribosomal proteins, and finally incubated at 37 °C for 1 h with secondary antibody conjugated to Alexa Fluor 488 (1:500; GeneCopoeia, Rockville, MD, USA) or DyLight 594 (1:500; Abbkine Scientific, Wuhan, China). Coverslips were mounted with an antifade solution containing DAPI (Solarbio).
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5

Immunofluorescence Analysis of β-catenin Translocation

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Immunofluorescence analyses were conducted to evaluate the nuclear translocation of β-catenin. HDPSCs were seeded on a confocal dish at a density of 103 cells/well and cultured in the mineralization induction medium for 4 days. Cells were fixed with 4% PFA for 20 min and permeabilized with 0.3% Triton X-100 in PBS for 10 min, after which they were incubated overnight with the anti-β-catenin polyclonal antibody (1:800; 8814; Cell Signaling Technology, Danvers, MA, USA) at 4 °C. The following day, after washing with PBS, cells were incubated with fluorescein-conjugated goat anti-rabbit antibody (1:200, DyLight 594, A23420; Abbkine, CA, USA) for 1 h in a dark chamber. Subsequently, the cells were counterstained with 4′6-diamidino-2-phenylindole (DAPI; Beyotime, Shanghai, China) for 10 min for nuclear labeling. Finally, we captured images using a confocal laser scanning microscope (Olympus, Tokyo, Japan).
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6

Oxethazaine Inhibits AURKA in ESCC Cells

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ESCC cells were seeded into 24-well plates with glass slides and treated with various concentrations of oxethazaine (0, 1, 2.5, 5, and 10 µM) for 24 h. After washing with 1×PBS, cells were fixed with 4% paraformaldehyde for 30 min. Permeabilized with 0.5% Triton X-100 for 10 min after washing with 1×PBS. Then the cells were incubated with primary antibodies AURKA, p-Histone H3 or p-AURKA T288 diluted in 3% bovine serum albumin in PBS overnight at 4 °C and with secondary antibody FITC (#F-2761, Invitrogen), Cyanine3 (#A10520, Invitrogen) or Dylight 594 (#A23420, Abbkine) for 2 h, respectively. Finally, cell nuclei were stained with DAPI for 15 min at room temperature. The images were captured by IN Cell Analyzer 6000 and analyzed by Image J.
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7

Immunofluorescence Staining Procedure

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The IF staining was carried out as previously reported [24 (link),25 (link),27 ,65 (link),66 ]. Briefly, cells seeded and treated in chamber slides were fixed with 4 % paraformaldehyde for 15 min at RT, treated with 0.5 % Triton X-100 for 20 min, and blocked with 5 % goat serum (1:10 dilution) for 20 min at RT, followed by incubating with primary antibodies against SV40 T (1:50 dilution; Santa Cruz; Cat# sc-147), Krt10 (1:50 dilution; Bimake; Cat# A5266), Krt14 (1:50 dilution; Bimake; Cat# A5434), and Krt15 (1:50 dilution; Bimake; Cat# A5627) overnight. After being washed, the cells were incubated with DyLight 594, goat anti-mouse IgG (1:200 dilution; Abbkine; Cat# A23410) or goat anti-rabbit IgG/APC (1:200 dilution; Bioss; Cat# bs-0295G-APC). The nuclei were counterstained with DAPI (10 μg/mL). Minus primary antibody or control IgG was used as a negative control. IF results were recorded by using a laser confocal microscope (Leica TCS SP8).
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8

Comprehensive Kidney Tissue Analysis

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Human kidney tissue was subjected to Masson, IHC, and IF experiments, as described in a previous study (Yang et al., 2019 (link); Li et al., 2022b (link)). Antibodies and dilution concentrations are described as follows: APOC1 (Abcam, United States, 1:200 dilution), DyLight 488 (Abbkine, United States, 1:1,000, dilution), and DyLight 594 (Abbkine, United States, 1:1,000, dilution). Histochemical sections and Masson-stained kidney tissues were scanned in whole sections.
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9

Characterization of Osteoclast Differentiation

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Mouse anti-iNOS (ab49999), Rabbit anti-Mannose Receptor (ab64693), Mouse anti-Osteocalcin (ab13420), Rabbit anti-Alkaline Phosphatase (ab218574) were obtained from abcam, USA; DyLight 488, Goat Anti-Mouse IgG (A23210, Abbkine, USA); DyLight 594, Goat Anti-Rabbit IgG (A23420, Abbkine, USA); Phalloidine (40735ES75, YEASEN, China); DAPI (C1005, Beyotime, China); M-CSF (400-28, Peprotech, USA); IL-4 (400-04, Peprotech, USA).
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10

Immunohistochemical Analysis of Hippocampal Neurogenesis

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Coronal hippocampal slices were fixed in 4% paraformaldehyde for 10 minutes, before being washed in phosphate buffered saline, blocked in 5% goat serum and 0.3% Triton X-100, and incubated with the appropriate primary antibody (Nestin, 1:500, mouse, Abcam; Ki67, 1:200, rabbit, CST, Massachusetts, USA) overnight at 4°C. These sections were then washed 3 times in phosphate buffered saline and incubated for 1 hour at room temperature in the appropriate secondary antibody (DyLight 488, 1:100, green goat anti-rabbit, Abbkine, California; DyLight 594, 1:100, red goat anti-mouse, Abbkine, California, USA) for visualization. Finally, the sections were counterstained with 4’,6-diamidino-2-phenylindole (Beyotime Institute of Biotechnology) and observed using a fluorescence microscope (DMi8; Leica, Solms, Germany). ImageJ software quantified the number of single- and double-positive cells in the hippocampal dentate gyrus.
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