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10 protocols using saponin

1

Subcellular Localization of GHR

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Immunofluorescence was performed on fixed cells to determine the subcellular distribution of GHR. HEK293T cells and HepG2 cells were plated on 12-well plates treated with polylysine and transfected with either GHR-WT or mutant GHR expression plasmids. 48 hours after transfection, the cells were fixed with 4% paraformaldehyde for 20 minutes and permeabilized with saponin (Beyotime Biotechnology, P0095, China) for 20 minutes. QuickBlockTM blocking solution (Beyotime Biotechnology, P0220, China) was added to block non-specific antibody binding sites for 10 minutes. The cells were then stained with anti-HA monoclonal antibody (Abcam, USA, ab18181, 1:200 dilution) at 4°C overnight. Anti-mouse secondary antibody conjugated with Alexa Fluor 488 (CST, Danvers, MA, USA, 4408s, 1:1000 dilution) were added and incubated at room temperature in dark for 1 hour. DAPI was added to stain nucleus at room temperature in dark for 10 minutes. Fluorescence was detected using a Leica TCS SP5 II confocal fluorescence microscope (Leica, Germany).
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2

Fluorescent Labeling of Red Blood Cells

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The RBC smear was fixed with methanol, permeabilized with saponin (P0095, Beyotime, Shanghai, China) and blocked with QuickBlock™ blocking buffer (P0260, Beyotime, Shanghai, China). The erythrocyte membrane was fluorescently labeled with 10 µM working solution of DiD (D4019, US Everbright, Suzhou, China). A TCS SP8 X confocal laser was used to observe fluorescence at 405 nm and 633 nm excitation. The antibody used and dilution ratio was as follows: PMCA4 antibody (NB300-569, NOVUS), 1:400; and anti-mouse IgG (H+L), CF™ 405S antibody produced in goat (SAB4600023, Sigma–Aldrich, USA), 1:100. ImageJ software was used to measure the fluorescence intensity in pictures of RBCs quantitatively.
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3

Subcellular Localization of Mud Crab Proteins

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Subcellular localization of HUWE1, TRAF6, and p53 in mud crabs was detected via confocal microscopy assay. Mud crab hemocytes were seeded onto a confocal dish and fixed with paraformaldehyde (4%) for 15 min. Then, the hemocytes were permeabilized using saponin (Beyotime, China) for 10 min. After being washed with PBS, the hemocytes were blocked with QuickBlock Western (Beyotime, China) for 30 min at room temperature. Subsequently, the cells were incubated with anti-HUWE1, anti-TRAF6, and anti-p53 antibodies at 4°C overnight, which was followed by washing with PBS and incubation with the Cy3-labeled goat anti-mouse IgG or FITC-labeled goat anti-rabbit secondary antibodies for 1 h at room temperature. Finally, DAPI (4′,6-diamidino-2-phenylindole) was used to stain for the cell nucleus for 5 min at 4°C, and images were obtained with a confocal microscope (Zeiss, Germany).
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4

Quantifying autophagic flux in primary hepatocytes

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Primary hepatocytes were seeded in 6-well plate and incubated with Ad-GFP-LC3B (30 MOI) at 37 °C for 24 h. After incubation, the primary hepatocytes were washed with PBS and the cells were treated with or without 25 μmol/L chloroquine (CQ; Sigma–Aldrich, UK) for 6 h. Primary hepatocytes were harvested and washed with either immunostaining permeabilization solution with saponin (Beyotime Biotechnology, Shanghai, China) or PBS alone. After three times washing, the cells were detected with a CytoFLEX S Flow cytometer (Beckman, CA, USA) and analyzed using FlowJo software.
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5

Visualizing GLUT4 in C2C12 Myotubes and Mouse Gastrocnemius

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C2C12 myoblasts were cultured on 35-mm-diameter confocal dishes and allowed to differentiate for 4–5 days. After treatment with NRG-1β, the myotubes were fixed in 4% (v/v) PFA for 15 min, permeabilized by adding a buffer containing saponin (Beyotime) for 10 min at room temperature, and then incubated in PBS with 3% (w/v) BSA for 1 h at room temperature, followed by incubation with anti-GLUT4 (1:300; Affinity, Suzhou, China) overnight at 4°C. The cells were washed three times with PBS (10 min each time) and then incubated with Alexa Fluor 594-conjugated goat anti-mouse secondary antibody for 2 h at room temperature. Detection was performed using the confocal microscope (TCS SP8 X; Leica Heidelberg, Germany).
Mice were anesthetized with 1% (w/v) pentobarbital sodium and perfused with saline for a few minutes, followed by perfusion with 4% (v/v) PFA in PBS. The gastrocnemius tissues were dissected and soaked overnight at 4°C in 4% (v/v) PFA and then in 30% (w/v) sucrose at 4°C for 48 h. Gastrocnemius slices (20 μm) were prepared and immunofluorescence detected as described above.
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6

Immunostaining of CNX and CD317 in HeLa cells

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In total, 1 × 104 HeLa cells were cultured on cell climbing slices. Following incubation for 6 h with 100 nM BAF, cells were fixed in ice-cold 4% paraformaldehyde and permeabilized in PBS with 0.05% Triton X-100 and 3% BSA. Immunostaining was performed using rabbit anti-CNX antibody (Proteintech, 10427-2-ap) and mouse anti-CD317 antibody (in-house, ref. [26 (link)]) followed by incubation with anti-mouse IgG Alexa Fluor 488 (Beyotime, P0188), anti-rabbit IgG Cy3 (Beyotime, P0183). For monitoring the colocalization of CNX and autophagosomes, cells were transfected with RFP-LC3, fixed in ice-cold 4% paraformaldehyde, and permeabilized with 0.1% saponin (Beyotime, P0095). Then immunostaining for CNX was performed as aforementioned description. Finally, microscopy was performed using a STELLARIS 5 confocal microscope from Leica Microsystem (Mannheim, Germany).
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7

Immunofluorescent Localization of EAAC1 and GAT1

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Slides were fixed with 4% PFA at 4°C for 15 min and incubated with PBS containing 0.1% saponin (Beyotime Institute of Biotechnology, Himen, China) and 1% normal goat serum or 2% normal donkey serum (Beyotime Institute of Biotechnology) at room temperature for 30 min. Slides were then incubated with primary mouse polyclonal anti-EAAC1 (1:500; cat. no. orb149931; Biorbyt, Ltd., Cambridge, UK), or GAT1 (1:500; cat. no. ab426; Abcam, Cambridge, UK) at 4°C overnight. Slides were subsequently washed and incubated with secondary fluorescent Alexa-Fluor-488-conjugated goat anti-mouse or rabbit immunoglobulin G (cat. no. a24920/a24922; 1:100; Thermo Fisher Scientific Inc.) in a dark room for 2 h at room temperature. DAPI staining (Beyotime Institute of Biotechnology) was used for nuclear staining. Slides were observed with a laser-scanning confocal microscope (TCS SP5; Leica Microsystems, Inc., Buffalo Grove, IL, USA).
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8

Visualizing Cellular Uptake of Doxorubicin

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We used a confocal laser scanning microscope to verify the uptake of A-BG-DOX and free DOX by HepG2 cells. Briefly, the cells were seeded on a confocal dish at a density of 1 × 105 cells and incubated overnight. The next day, we replaced the culture media with fresh media (pH 6.5 and 7.4). Next, A-BG-DOX and free DOX were added to the cells and incubated for 24 h. After that, the cells were washed with PBS and fixed with immunol staining fix solution (Beyotime, Shanghai, China) for 10 min. We added immunostaining permeabilization solution with saponin for 10 min (Beyotime, China). After fixing, permeating, and washing, we incubated the samples with monoclonal ANTI-FLAG M2 antibody (Sigma, USA) diluted at a ratio of 1:3000 overnight at 4 °C, and then the cells were washed three times to remove the excess antibodies. Next, we incubated the cells with goat anti-mouse IgG H&L (Alexa Fluor 647) antibody at a dilution of 1:500. Finally, the samples were stained with Dil (Beyotime, China) and DAPI (Sigma, USA) and studied under a Leica TCS SP8 (Leica, Germany) microscope.
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9

Immunofluorescence Analysis of gp78 and NLRP3

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Cells were primed with LPS for 4 h, then fixed in 4% fixative solution (Solarbio) for 20 min and permeabilized with saponin (Beyotime) for 5 min. After blocking with 5% bovine serum albumin (BSA; Solarbio) for 1 h at room temperature, cells were incubated overnight with anti-gp78 and anti-NLRP3 antibodies [1:200 in phosphate-buffered saline (PBS) containing 5% BSA] followed by staining with DyLight 488-labeled (Multisciences) and Alexa Fluor 555-labeled secondary antibodies (Abcam). Nuclei were co-stained with DAPI (Roche). Stained cells were viewed under a confocal fluorescence microscope (LSM 880 with AiryScan, Nikon A1R).
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10

SFTSV Infection of THP-1 Macrophages

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The THP-1 cells were obtained from the ATCC cell line, and the virus was a strain HB29 of the SFTSV virus (GenBank No. HM745930, HM745931, HM745932) isolated from diagnosed patients with SFTS by the Chinese Center for Disease Control and Prevention. The antibodies used in this study included Mouse Anti-Human CD14 (FITC marker) (BD) (Franklin Lakes, NJ, USA). Additionally, commonly used reagents and materials included 4% paraformaldehyde (Biosharp) (Hefei, China), Triton X-100 (Beyotime) (Shanghai, China), Saponin (Beyotime), RPMI 1640 (ThermoFisher) (Waltham, MA, USA), EDTA (Gibco) (Grand Island, NY, USA), BSA (Coolaber) (Beijing, China), fetal bovine serum (FBS) (Gibco) (Grand Island, NY, USA), Penicillin/Streptomycin (PS) (Gibco) (Grand Island, NY, USA), phorboll-12-myriate-13-acetate(PMA) (Sigma Aldrich) (St. Louis, MO, USA), DAPI staining solution (Beyotime) (Shanghai, China), 8-well chamber cover glass (ThermoFisher) (Waltham, MA, USA), etc. The detailed procedural steps of the experiment are illustrated in Figure 1A.
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