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Lc it tof ms

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The LC-IT-TOF-MS is a liquid chromatography-ion trap-time of flight mass spectrometry system. It is used for high-performance analytical separation and precise mass measurement of various compounds.

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9 protocols using lc it tof ms

1

Optimized Synthesis of Novel Compounds

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Unless otherwise specified, reactions were performed under an inert atmosphere of argon and monitored by thin-layer chromatography (TLC) and/or LCMS. All reagents were purchased from commercial suppliers and used as provided. Synthetic intermediates were purified using CombiFlash chromatography system on 230–400 mesh silica gel. 1H and 13C NMR spectra were obtained using Bruker DPX-400 or AVANCE-400 spectrometer at 400 and 100 MHz, respectively. NMR chemical shifts were described in δ (ppm) using residual solvent peaks as standard (chloroform-d, 7.26 ppm (1H), 77.16 ppm (13C); methanol-d4, 3.31 ppm (1H), 49.00 ppm (13C); DMSO-d6, 2.50 ppm (1H), 39.52 ppm (13C); acetone-d6, 2.05 ppm (1H), 29.84 ppm (13C)). Data were reported in a format as follows: chemical shift, multiplicity (s = singlet, d = doublet, dd = doublet of doublet, t = triplet, q = quartet, br = broad, m = multiplet, abq = ab quartet), number of protons, and coupling constants. High resolution mass spectral data were measured in-house using a Shimadzu IT-TOF LC/MS for all final compounds. All compounds submitted for biological testing were confirmed to be ≥95% pure by analytical HPLC. Synthetic methods, spectral data, and HRMS for novel compounds are described in detail below.
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2

Detailed Synthetic Protocols for Novel Compounds

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Detailed methods are provided in Supporting Information, including characterization and purity. Unless otherwise specified, reactions were performed under an inert atmosphere of argon and monitored by thin-layer chromatography (TLC) and/or LCMS. All reagents and solvents were purchased from commercial suppliers (Sigma-Aldrich, Fisher Scientific, Ambeed, Combi-Blocks, Enamine) and used as provided. Synthetic intermediates were purified using a CombiFlash chromatography system on 230–400 mesh silica gel or Shimadzu prep-HPLC system. 1H and 13C NMR spectra were obtained using Bruker DPX-400 or AVANCE-400 spectrometer at 400 and 100 MHz, respectively. NMR chemical shifts were described in δ (ppm) using residual solvent peaks as standard. High resolution mass spectral data were measured in-house using a Shimadzu IT-TOF LC/MS for all final compounds. Optical rotations were measured with a Perkin-Elmer 241 polarimeter operating on the mercury lamp line (546 nm), using a 100 mm pathlength cell. All compounds submitted for biochemical and biological testing were confirmed to be ≥ 95% pure by analytical HPLC.
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3

Synthesis of 3-Chloro-6-Methoxybenzo[b]Thiophene Derivatives

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3-chloro-6-methoxybenzo[b]thiophene-2-carbonyl chloride was purchased from Frontier Scientific Services, Inc. All chemicals and solvents were purchased from Sigma Aldrich, Fisher Scientific, Matrix Scientific or Oakwood Chemical and were used without further purification. 2 was synthesized using the protocols reported by Lai and colleagues.20 (link) Synthetic intermediates were purified using Biotage flash chromatography system on 230–400 mesh silica gel. 1H and 13C NMR spectra were obtained using Bruker DPX-400 or AVANCE-400 spectrometer at 400 and 100 MHz, respectively. NMR chemical shifts were described in δ (ppm) using residual solvent peaks as standard (CDCl3, 7.26 ppm (1H), 77.16 ppm (13C); CD3OD, 3.31 ppm (1H), 49.00 ppm (13C); DMSO-d6, 2.50 ppm (1H), 39.52 ppm (13C); Acetone-d6, 2.05 ppm (1H), 29.84 ppm (13C)). Data were reported in a format as follows: chemical shift, multiplicity (s = singlet, d = doublet, dd = doublet of doublet, t = triplet, q = quartet, br = broad, m = multiplet, abq = ab quartet), number of protons, and coupling constants. High resolution mass spectral data were measured in-house using a Shimadzu IT-TOF LC/MS for all final compounds. All compounds submitted for biological testing were confirmed to be ≥95% pure by analytical HPLC. Synthetic methods, spectral data, and HRMS for novel compounds are described in detail below.
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4

LC-MS Profiling of Phytochemicals

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Liquid chromatographic analysis was carried out using LC-IT-TOF/MS (Shimadzu Corp., Japan). A Inertsil ODS-SP C18 (4.6×150 mm, 5 μm) column was used and the column temperature was held at 40°C. The detection wavelength was 275 nm. The sample injection sequence was random and the injection volume was 15 μL. The autosampler temperature was maintained at 4°C throughout the analysis. The mobile phase included solvent A (water) and solvent B (acetonitrile). The elution programme was as follows: 0-0.01 min, 5% B; 0.01-3 min, 5%-12% B; 3-7 min, 12%- 30% B; 7-10 min, 30% - 50% B; 10-14 min, 50% - 75% B; 14-25 min, 75% -95% B; 25-31 min, 95% -95% B; and 31-31.01 min, 95%-5% B. The flow rate was set at 1 mL/min.
Mass spectrometry was performed on an LC-IT-TOF/MS system with an electrospray ionization source (ESI) running in both positive (ESI+) and negative (ESI-) modes. MS data was gathered in full scan mode with a range of m/z 100-1000. The dry gas temperature was set to 200°C (ESI-) and 225°C (ESI+), and its flow rate was 1.5 L/min. The nozzle voltage was 500 V in both ESI- and ESI+. The electrospray capillary voltage was 3.5 kV (ESI-) and 4.5 kV (ESI+).
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5

Quantitative LC-MS/MS Determination Protocol

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The LC–MS/MS system consisted of a Shimadzu LC-20A HPLC system and LC–IT–TOF MS equipped with an electrospray ionization source (Shimadzu, Kyoto, Japan). The chromatographic separation was achieved on the Capcell PAK C18 UG120 column (2.1 × 150 mm, 3 μm particle size, Shiseido, Tokyo, Japan) using a mobile phase comprising 0.2% acetic acid (A) and acetonitrile (B) at a flow rate of 0.2 mL/min and a temperature of 50 °C. The gradient program was as follows: 0 min, 10% B; 5 min, 20% B; 45 min, 40% B; 50 min, 85% B; 55 min, 85% B; 55.1 min, 10% B; 70 min, 10% B. The injection volume was 5 μL. The operating electrospray ionization (ESI) parameters were as follows: ion spray voltage, 4.5 kV; drying gas (N2), 1.5 L/min; and curved desolvation line temperature and heat block temperature, 200 °C. The MS system was calibrated prior to the analysis by using sodium trifluoroacetate solution. The HPLC and MS systems were controlled by the Lab Solution (Ver. 3.1.360) software.
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6

Quantitative Analysis of Okaramines by LC-MS

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The authentic standards of okaramines A, B, and C, and soil extracts prepared as described above were analyzed by LC-IT-TOF-MS (Shimadzu, Kyoto, Japan). The samples (5 µl) were injected to a TSKgel ODS-80Ts column (5.0 µm, 2.0 × 250 mm, Tosoh Corporation, Tokyo, Japan). The column oven was set at 40°C and the flow rate was 0.2 ml/min. The mobile phases were water containing 0.1% (v/v) formic acid (solvent A) and acetonitrile containing 0.1% (v/v) formic acid (solvent B) with gradient elution of 3%–97% B at 0–72 min (linear), 97% B at 72–84 min (linear), 97% B at 84–96 min, 3%–97% B at 96–116 min (linear), 97% B at 116–128 min, and 3% B at 128–148 min. MS conditions were as follows: ionization, ESI; probe voltage, + 4.5 kV and – 3.5 kV; CDL temperature, 200°C; heating block temperature, 200°C; nebulizing gas flow, 1.5 L/min; drying gas pressure, 100 kPa. MS scan was in the range of m/z 520–570. MS/MS scan was in the range of m/z 100–570 for the most intense ion of the MS scan. Data acquisition and analysis were performed using LCMS solution software (Shimadzu, Kyoto, Japan).
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7

Analysis of Prenylated Phenolics by HPLC-MS

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The reaction products were analyzed by HPLC as described above, except that drupanin dimethylallyltransferase was assayed using an isocratic program of methanol:water:acetic acid (80:20:0.3). Reaction products were monitored at wavelengths of 280–330 nm, and prenylated phenolics were identified by LC-IT-TOF/MS (Shimadzu) in use of a TSK gel ODS-80Ts column (2 × 250 nm, Tosoh) and a gradient program of 20% (v/v) to 80% (v/v) solvent B (acetonitrile with 0.3% (v/v) formic acid) in solvent A (0.3% (v/v) formic acid) for 60 min at 40 °C and a flow rate of 0.2 ml min−1. Prenylated phenolics were identified using a positive ion mode with an m/z range of 50–500.
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8

Phenolic Compounds Characterization by LC-MS

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It was determined using LC–MS (Shimadzu LC-IT-TOF-MS, Shimadzu, Tokyo, Japan) with Shim-pack XR-ODS column 2.2 μm (3.0 mm, 50 mm, Shimadzu, Japan). The solvent gradient consisted of 0.5% formic acid in water (A) and acetonitrile (B). Compounds were eluted into the ESI ion source at the flow rate of 0.3 mL/min with isocratic elution 5% B (0–15 min), then gradient 15–25% (15–25 min), 35% B (25–35 min), 95% B (35–40 min), isocratic 95% B (40–43 min). The column was re-equilibrated with 5% B for 5 min. The column was maintained at 40 °C during the run. The MS was programmed to carry out at full scan over a range of m/z 100–1100 (MS1) and m/z 100–700 (MS/MS) in both positive and negative ESI modes. The heat block and curved desolvation line (CDL) temperature was maintained at 200 °C. Nebulizing nitrogen gas was used at a flow rate of 1.5 L/min, and as the drying gas at 75 kPa. Phenolic compounds were characterized by their MS, MS/MS spectra, UV spectra, and in comparison with previously published data [42 (link),43 (link),44 (link)].
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9

Chromatographic Separation and Identification of AkPT1 Reaction Products

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Extracts of AkPT1 reaction mixtures were chromatographically separated on a LiChrosphereRP-18 column (4.0 mm × 250 mm, Merck) at a flow rate of 1.0 ml min -1 and at 40 °C under the control of a D-2000 Elite HPLC system (Hitachi, Tokyo, Japan). An isocratic separation program of 20% (v/v) solvent A (water with 0.3% (v/v) acetic acid) and 80% (v/v) solvent B (methanol with 0.3% (v/v) acetic acid) was used except for screening of xanthotoxol O-DT activity.
Extracts of xanthotoxol O-DT assay were analyzed with a linear gradient program, consisting of 20% to 90% (v/v) of solvent B (methanol with 0.3% (v/v) acetic acid) in solvent A (water with 0.3% (v/v) acetic acid) over 45 min. Enzymatic products were scanned at a range of 200-370 nm with a L2445 Diode Array Detector (Hitachi).
Reaction products of AkPT1 were identified using LC-IT-TOF-MS (Shimadzu), a TSK gel ODS-80Ts column (2 mm × 250 mm, Tosoh) and a linear gradient program composed of 20% to 80% (v/v) solvent B (acetonitrile with 0.1% (v/v) formic acid) in solvent A (water with 0.1% (v/v) formic acid) at a flow rate of 0.2 ml min -1 and at 40 °C. Precursor ions for MS 2 analysis were selected in a range of m/z = 50-500.
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