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9 protocols using anti rabbit igg

1

Immunoprecipitation of ACE2 from Lung Tissue

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The lung tissue lysate was precleaned by adding 10 μL of Protein A/G Plus Agarose (Sigma, Merck KGaA, Darmstadt, Germany) and incubated at 4 °C for 1 h. Rabbit anti-ACE2 monoclonal antibody (Proteintech, Chicago, USA), rabbit antiblood group A antibody (ARP), or antirabbit IgG (Genetex, CA, USA) was mixed with Protein A/G Plus Agarose and incubated at 4 °C for 4 h. The antibody–agarose mixtures were individually mixed with precleaned tissue lysate and incubated at 4 °C overnight. After incubation, agaroses were washed 5 times with lysis buffer and the bound proteins were eluted with SDS-PAGE sample buffer.
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2

Immunoblotting Protocol for Protein Detection

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Immunoblotting was performed as described by Chiang et al. (2014) using an enhanced chemiluminescence detection kit (Thermo Scientific).11 (link) Antibodies used were against the following proteins or epitopes: CstF64 (Abcam, ab72297), MRJ (Abnova, H00010049-A01), RSV F (Santa Cruz Biotechnology, sc-101362), RSV multiple proteins (Abcam, ab20745), HA (Covance, 16B12), actin (EMD Millipore, MAB1501), and GAPDH (Proteintech, 10494-1-AP). Horseradish peroxidase (HRP)-conjugated secondary antibodies included anti-mouse immunoglobulin G (IgG; SeraCare, 5210-0183) and anti-rabbit IgG (GeneTex, GTX213110-01)
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3

Cholera Toxin Production Assay

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The GM1 enzyme-linked immunosorbent assay was used to determine the CT production in culture supernatant (Lee et al., 2012 (link)). Purified whole CT (Cayman Chemical, Ann Arbor, MI, United States) was used to provide a standard curve. Rabbit polyclonal anti-CTB (GeneTex, Irvine, CA, United States) and anti-rabbit IgG (GeneTex) were used for detection. The optimal laboratory conditions for CT production from classical biotype strains were as follows: culture at 30°C, LB pH 6.5 buffered with 50 mM Tris–which has been described as “agglutinating condition” (Waldor and Mekalanos, 1996 (link)). CT production (amount of CT/1 OD600) in the classical biotype strain O395 under such conditions was considered the reference CT production value. CT production from El Tor strains was measured in culture media after 16 h of single-phase shake culture at 30 and 37°C in LB, PBS-buffered LB, AKI media (0.5% NaCl, 0.3% NaHCO3, 0.4% yeast extract, and 1.5% Bacto-Peptone), and LB buffered with 50 mM Tris pH 6.5. CT production (amount of CT/1 OD600) values of mean ± standard deviation in El Tor strains were obtained from three independent experiments and were compared with the reference value. Expression of CT in V. cholerae strains was additionally confirmed by immunoblot analysis using anti-CT (Supplementary Figure S1).
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4

Benzyl Isothiocyanate Induces Apoptosis

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Benzyl isothiocyanate (BITC), cisplatin, dimethyl sulfoxide (DMSO), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), and other chemicals of analytical grade were acquired from Sigma-Aldrich (St. Louis, MO, USA) unless otherwise specified. Dulbecco’s modified Eagles medium (DMEM), fetal bovine serum (FBS), L-glutamine, and penicillin/streptomycin were purchased from HyClone (Logan, UT, USA). ZVAD-fmk (a pan-caspase inhibitor) was purchased from Merck Millipore (Billerica, MA, USA). Caspase-3 and Caspase-9 Colorimetric Assay Kits were obtained from R&D Systems (Minneapolis, MN, USA). 2’,7’-Dichlorodihydrofluorescein diacetate (H2DCFDA) (an ROS indicator) and 3,3’-dihexyloxacarbocyanine iodide [DiOC6(3)] [a mitochondrial membrane potential (Δψm) detector] were purchased from Molecular Probes/Thermo Fisher Scientific (Waltham, MA, USA). The anti-Bax, anti-Bad, anti- Bcl-2, anti-Bcl-xL, anti-cytochrome c, anti-caspase-9, anti-Caspase-3, and anti-β-actin, as well as anti-rabbit IgG or anti-mouse horseradish peroxidase (HRP)-linked antibodies were all bought from GeneTex (Hsinchu, Taiwan).
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5

Protein Expression Analysis in Transfected Cells

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Following transfection for 48 h, cell lysates were prepared using RIPA lysis buffer and protease cocktail inhibitor I (Merck KGaA). The protein was separated using 10% SDS-PAGE and subsequently transferred to a PVDF membrane. After blocking in a 5% non-fat milk for 1 h, the membrane was washed with TBS + 0.1% Tween-20. Membranes were incubated with primary antibodies against METTL3 (1:1,000; cat. no. GTX105037; GeneTex, Inc.), Bcl-2 (1:2,000; cat. no. 60178-1-Ig; ProteinTech Group, Inc.); Bax (1:1,000; cat. no. 50599-2-Ig; ProteinTech Group, Inc.); active caspase3 (1:1,000; rabbit polyclonal antibody; cat. no. 19677-1-AP; ProteinTech Group, Inc.); p-AKT (1:1,000; cat. no. 66444-1-Ig; ProteinTech Group, Inc.); AKT (1:500; cat. no. 9272; Cell Signaling Technology, Inc.); p70S6K (1:1,000; cat. no. GTX107562; GeneTex, Inc.); Cyclin D1 (1:1,000; cat. no. GTX108624; GeneTex, Inc.) and tubulin (1:1,000; cat. no. GTX76511; GeneTex, Inc.) at 4°C overnight, followed by incubation with anti-rabbit IgG (1:2,000; cat. no. GTX300119; GeneTex, Inc.) or anti-mouse IgG (1:2,000; cat. no. GTX300120; GeneTex, Inc.) secondary antibodies for 1 h at room temperature. Protein bands were visualized using Pierce ECL Western Blotting Substrate (Thermo Fisher Scientific, Inc.). Protein band intensity was analyzed using Image J software, v1.41 (National Institutes of Health).
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6

Cell Cycle Regulation Protein Analysis

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K+PFHxS (≥99.9% purity) was obtained from 3M Company (St. Paul, MN, USA). PFHxS was prepared by dissolving in dimethyl sulfoxide (DMSO). Antibodies of Cdk2, Cdk4, Cyclin D1, Cyclin E, PCNA, and GAPDH were purchased from Santa Cruz (Dallas, TX, USA). Anti-rabbit IgG and anti-mouse IgG were obtained from GeneTex (Irvine, CA, USA).
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7

Quantification of N-Cadherin and E-Cadherin

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LL/2 were plated in 100-mm dish at 1×106 cells and cultured for 24 hrs in growth medium. After 24 hrs, cells were treated with CXCL8-IP10 for 48 hrs. The cells were harvested and added lysis buffer plus Phosphatase Inhibitor Cocktail (G-Bioscience). The protein concentration was determined by Bradford Protein Assay Kit (GeneMark). Each sample (60 mg) was loaded in 8% SDS-PAGE and was blotted onto a 0.45 Micron PVDF transfer membrane (GVS North America). Primary antibodies, N-cadherin (GeneTex) and E-cadherin (GeneTex), were diluted in 1x PBS containing 0.1% Tween®20 (PBST) and incubated at 4°C overnight. After washing with PBST, the membranes were incubated with Anti-Rabbit IgG (GeneTex) secondary antibody for 1 hr. The signals were detected by ImageQuant LAS 4000 mini luminescent image analyzer (GE Healthcare Bio-Sciences AB). The protein bands were quantified using ImageJ software to determine the integrated density of each band, and the ratio to GAPDH was then calculated. The experiments were repeated at least 3 times.
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8

Western Blot Analysis of Endothelial Markers

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After 48 h incubation with BSA or TAGE, preparation of cell lysate and western blot analysis were performed as previously described24 (link), using the following antibodies: anti-VE-cadherin (sc-9989 at 1:5000; Santa Cruz Biotechnology, Inc.), rabbit anti-ZO-1 (GTX108627 at 1:1500; GeneTex), mouse anti-β-actin (sc-47778 at 1:12,000; Santa Cruz Biotechnology, Inc.), anti-rabbit IgG (GTX77057 at 1:5000; GeneTex), and anti-mouse IgG (P0260 at 1:5000, Dako Denmark A/S).
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9

Western Blot Analysis of Cellular Proteins

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Total cellular proteins were extracted by lysis of the harvested cells with the protein extraction buffer at 4 °C for 1 h, followed by denaturation at 95 °C for 5 min, and then separated by regular sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) according to the procedure reported formerly [24 (link)]. Next, the proteins were transferred to nitrocellulose membranes (EMD Millipore, Billerica, MA, USA), after which the membrane was probed for the proteins of interest with specific antibodies. Finally, the immunoreactive bands were detected with an enhanced chemiluminescence (ECL) detection system (Amersham Life Sciences Inc., Arlington Heights, IL, USA). The expression of GAPDH was considered as a loading control. Primary and secondary antibodies used in this study includes: anti-LC3, anti-p62, anti-Beclin-1, anti-Bax, anti-Atg5, and anti-cyclin B (Cell Signaling Technology, Beverly, MA, USA); anti-p53, anti-PARP, anti-Caspase 3, anti-pro-Caspase 3, anti-cyclin A, and anti-GADPH (Santa Cruz Biotechnology, Santa Cruz, CA, USA); anti-p27, anti-CDK2, anti-mouse IgG, and anti-rabbit IgG (GeneTex, Irvine, CA, USA).
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