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8 protocols using sulforhodamine 101

1

Fluorescent Dye Characterization in ICS

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In this study, we used several different charged (negative, positive, and neutral) molecules of fluorescent dyes. Alexa-488-biocytin, Alexa-568, and sulforhodamine-101 were purchased from Molecular Probes. Lucifer Yellow, sulforhodamine-B, 1,1-Diethyl-2,2-cyanine iodide (decynium22, D22) 2-NBD-glucose, and 4-(4-(dimethylamino)-styryl)-N-methylpyridinium, (ASP+) were obtained from Sigma Chemical Co., Ltd. (St. Louis, MO, USA). For testing the compounds, one of these negatively or positively charged, or polar molecules, was added to the ICS at the following concentrations: 2 mg/mL (~3.6 µM) 2-NBD-Glucose [59 (link)]; 2 µM ASP+ [72 ]; 1 µM D-22 [72 ,73 (link)]; 1 µM sulforhodamine-101 [74 (link),75 (link),76 (link)]; 100 µM Alexa 488-biocytin [65 ]; 1 mM Lucifer Yellow [24 (link),77 (link)]; 200 µM Alexa 568 [65 ]; and 2 mM sulforhodamine-B [57 (link)].
Carbenoxolone (200 µM CBX), a gap junction uncoupler, used in this study to block fluorescent dye propagation was purchased from Sigma Chemical Co., Ltd. (St. Louis, MO, USA).
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2

Bulk Loading of Cortical Neurons with OGB-1 AM

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For bulk loading of cortical neurons the calcium-sensitive dye Oregon Green Bapta-1 AM (OGB-1 AM; Molecular Probes) was first dissolved in 4 μl DMSO containing 20% Pluronic, and further diluted (1/11) in dye buffer (150 mM NaCl, 2.5 mM KCl and 10 mM HEPES (pH 7.4)) to yield a final concentration of 0.9 mM. Sulforhodamine-101 (50 μM, Molecular Probes) was added to the solution for experiments in C57Bl/6 mice to distinguish neurons and astrocytes [40 (link)]. The dye was slowly pressure injected into the right visual cortex at a depth of 150–200 μm with a micropipette (3–5 MΩ, 3–10 psi, 2–4 min) under visual control by two-photon imaging (10x water immersion objective, Olympus). Activity of cortical neurons was monitored by imaging fluorescence changes with a custom-built microscope and a mode-locked Ti:sapphire laser (Mai Tai, Spectra-Physics) at 830 nm through a 40x water immersion objective (0.8 NA, Olympus). Scanning and image acquisition were implemented in custom software (Labview, NI). The average laser power delivered to the brain was <50 mW.
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3

Visualizing Cortical Neuron Dynamics

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On the imaging day, mice were anesthetized with isoflurane and the craniotomy, marked previously, was completed for dye injection. For bulk loading of cortical neurons Oregon Green Bapta-1 AM (Molecular Probes) was first dissolved in 4 μL of freshly prepared DMSO containing 20% Pluronic F-127 (Molecular Probes) and then further diluted in 35 μL of dye buffer [150 mM NaCl, 2.5 mM KCl, and 10 mM Hepes (pH 7.4) [21 (link)]. Sulforhodamine 101 (50 μM; Molecular Probes) was added to the solution to label astrocytes [22 (link)]. The dye was slowly pressure-injected into the left visual cortex at a depth of 150–200 μm at an angle of 30° with a micropipette (4–7 MΩ, 10 psi, 8 min) under visual control by two—photon imaging (20x water immersion objective, 0.5 N.A.; Olympus). The activity of cortical cells was recorded by imaging fluorescence changes with a two-photon microscope (Moveable Objective Microscope; Sutter Instrument) and a Ti:sapphire laser (Chameleon Vision II; Coherent) at 880 nm or 1,040 nm through a 20x (0.95 N.A.; Olympus) or 25x (1.05 N.A.; Olympus) water immersion objective. Scanning and image acquisition were controlled by Sutter software (4.07 frames per second for 512 × 512 pixels, Mscan; Sutter Instrument).
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4

Patch-Clamping the ALMR Neuron in C. elegans

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Worms were immobilized on 2% agarose pads with WormGlu (GluStitch), dissected, and patch-clamped as described in Eastwood et al. (2015) (link). Recordings were performed on the ALMR neuron due to geometric constraints of the stimulator system; ALMR is bilaterally symmetric to the previously used ALML neuron. The extracellular solution contained (in mM): NaCl (145), KCl (5), MgCl2 (5), CaCl2 (1), and Na-HEPES (10), adjusted to pH 7.2 with NaOH. Before use, 20 mM D-glucose was added, bringing the osmolarity to ~325mOsm. The intracellular solution contained (in mM): K-Gluconate (125), KCl (18), NaCl (4), MgCl2 (1), CaCl2 (0.6), K-HEPES (10), and K2EGTA (10), adjusted to pH to 7.2 with KOH. Before use, 1 mM sulforhodamine 101 (Invitrogen) was added to help visualize successful recording of the neuron.
Membrane current and voltage were amplified and acquired with an EPC-10 USB amplifier and controlled through Patchmaster software (HEKA/Harvard Biosciences). The liquid junction potential between the extracellular and intracellular solutions was −14 mV and was accounted for by the Patchmaster software. Data were sampled at 10 kHz and filtered at 2.9 kHz.
Electrophysiology source data from Eastwood et al. (2015) (link) are available upon request.
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5

Astrocyte Calcium Imaging with Fluo4-AM

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Astrocytes were imaged at 5 days in vitro using calcium indicator Fluo 4-AM (Invitrogen) and astrocyte marker[21 (link)] sulforhodamine 101 (Invitrogen). Fluo 4-AM and sulforhodamine 101 were diluted to final concentrations in HEPES-buffered saline containing the following: 119 mM NaCl, 5 mM KCl, 2 mM CaCl2, 2 mM MgCl2, 30 mM Glucose, 10 mM HEPES, and pH adjusted to 7.4. For imaging, the culture medium was replaced by 5μg/mL fluo4-am and incubated for 40 minutes at room temperature, following a second incubation with 5 μM sulforhodamine 101 for 20 minutes at room temperature. Cultures were gently washed with HEPES-buffered saline 3 times following incubations. Cultures were maintained at 35 degrees Celsius during imaging. Olympus microscope IX71 was used for wide-field fluorescence imaging, and recorded with Hamamatsu Digital CCD camera C10600 at (6.4 Hz frame rate). MetaMorph software was used for data collection; all further analysis was done with Matlab.
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6

Neurochemical Reagents for Electrophysiology

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Bicuculline, strychnine, tetrodotoxin, 6,7-dinitroquinoxaline-2,3-dione (DNQX), L-glutamic acid were obtained from Sigma (St. Louis, MO, USA). (2S,3S)-3-[3-[4-(Trifluoromethyl)benzoylamino]benzyloxy]aspartate (TFB-TBOA), D-2-amino-5-phosphonopentanoate (D-AP5) were obtained from Tocris Bioscience (Minneapolis, MN, USA). Sulforhodamine 101 and LPS-RS were purchased from Invitrogen (San Diego, CA). [3H] L-glutamic acid was obtained from Perkin Elmer.
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7

Inducing Epilepsy in ACSF

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Oxygenated (95% O2, 5% CO2) artificial cerebrospinal fluid (ACSF) contained in mM: 129 NaCl; 1.23 NaH2PO4; 10 glucose; 1.6 CaCl2.H2O; 3 KCl; 21 NaHCO3; 1.8 mM MgSO4. To induce epilepsy MgSO4 was eliminated and 2 mM KCl was added (low-[Mg2+] ACSF). Stock solutions of cell permeant Fluo-4 AM (2.5 mM, Life Technologies) and Oregon Green BAPTA-1 AM (OGB-1, 800 μM, Life Technologies) were diluted in 20% Pluronic F-127 (Life Technologies). Final DMSO concentration was 0.16% (Fluo-4) or 0.2% (OGB-1), which did not significantly altered epileptiform activity. Astrocytic γ-aminobutyric acid (GABA) transporter inhibitor SNAP-5114 (Tocris) stock solution (100 mM) was diluted in DMSO (final DMSO concentration in these experiments: 0.1%). Stock solution (50 mM, Sigma) of carbenoxolone hemisuccinate (CBX) was diluted in distilled water. Stock solution of astroglia-specific marker dye sulforhodamine101 (SR101, 10 mM, Invitrogen) was diluted in distilled water.
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8

Glucose Depletion Assay in Microfluidics

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One day prior to each glucose depletion assay, a single colony was inoculated in 5 mL of galactose media and grown at 30°C at 250 rpm overnight. On the day of each experiment, 1 mL of overnight culture was transferred into 50 mL of glucose medium and grown to OD600 0.3–0.6 (∼ 8 hr at 30°C, 250 rpm) before loading into the microfluidic chip. The setup of the microfluidic device and the time-lapse fluorescence microscopy have been described previously [15 (link), 28 (link)]. Briefly: A microfluidic chip was first primed with water. Five reservoirs were connected to the chip using 0.02in x 0.06in Tygon Micro-Bore tubing (Saint Gobain Performance Plastics) with 23-gauge Luer stub adapters (Becton Dickinson) and connection pins. Two reservoirs contained 20 mL of galactose and glucose media. Fluorescent tracer dye (Sulforhodamine 101, 1 μg/ml, Invitrogen) was added to glucose media to track the environmental concentration of glucose [15 (link)]. Two other reservoirs acted as waste outlets. The fifth reservoir contained the yeast culture. The chip was left in the growth chamber, attached to the microscope, for 30 min to allow it to reach thermal equilibrium at 30°C. Cells were loaded into the cell trapping chamber and were imaged every 5 min for 15 h in red, yellow fluorescence and transmitted light while a preprogrammed controller dynamically changed the input media (see below).
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