The largest database of trusted experimental protocols

13 protocols using p perk

1

Cnidium officinale Makino Modulates ER Stress Response

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells (1 × 106 cells/mL) were treated with indicated concentrations of Cnidium officinale Makino (40 or 80 μg/mL) for 24 h. The cells were subsequently lysed with RIPA buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% NP-40, 0.25% sodium deoxycholic acid, 1 M EDTA, 1 mM Na3VO4, 1 mM NaF) containing a protease inhibitors cocktail (Amresco, Solon, OH, USA). The protein supernatants were collected and quantified for protein concentration using an RC DC protein assay kit II (Bio-Rad, Hercules, CA, USA). Proteins were separated by SDS-PAGE 8–12% gels and transferred to nitrocellulose membranes. The membranes were blocked with 5% (v/v) non-fat dried milk in Tris-buffered saline with 0.05% Tween 20 and incubated with the required antibodies. Primary antibodies were used at a 1:500~1000 dilution (5% bovine serum albumin) and secondary antibodies at a 1:1000 dilution (5% skim milk). Then they were transferred to a Hybond ECL (Amersham Pharmacia, Piscataway, NJ, USA) transfer membrane for detection with antibodies for cleaved-PARP: CHOP (Cell Signaling, Danvers, MA, USA), ATF4 (Thermo Fisher, Waltham, MA, USA), P-PERK (Abcam, Cambridge, MA, USA), P-eIF2α (Bioss, Woburn, MA, USA), and β-actin (Santa Cruz, Dallas, TX, USA).
+ Open protocol
+ Expand
2

Molecular Mechanisms of PDGF-Induced ER Stress

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant human PDGF was purchased from PeproTech (100-14B, United States). pPERK, ATF6, IRE1α, GRP78, PDI, VPS34, Beclin1, ATG5, LC3II, GAPDH and secondary antibodies were obtained from Abcam (Abcam, United States), PDI was purchased from Cell Signaling Technology (Danvers, MA, United States), NLRP3, Pro-Caspase1, Caspase1, GSDMD, GSDMDP30, IL-1 were obtained from Proteintech (Proteintech, China). Goat anti-rabbit and anti-mouse IgG-HRP were purchased from Cell Signaling Technology (Danvers, MA, United States). An enhanced chemiluminescence (ECL) kit was purchased from Bio-Rad (Hercules, CA, United States). H&E kit was purchased from Beyotime.
+ Open protocol
+ Expand
3

Real-Time PCR and Western Blot Analyses

Check if the same lab product or an alternative is used in the 5 most similar protocols
Real-time PCR and western blot were performed as we previously did [21 (link)]. For PCR, primers used were shown in Supporting Table S1. Antibody dilution: β-actin: Santa Cruz, 1:500; HNF1b: Prosci Technology, 1: 1000; GRP78: Bioworld Technology, 1:500; CHOP: Bioworld Technology, 1:500; eIF2ɑ: Bioworld Technology, 1:500; P-eIF2ɑ: Santa Cruz, 1:500; PERK: Bioworld Technology, 1:500; P-PERK: Abcam, 1:1000; Akt: Cell Signaling Technology, 1:1000; P-Akt (S473): Cell Signaling Technology, 1:1000; PPARɑ: Santa Cruz, 1:500; PPARγ: Santa Cruz, 1:500; Srebp-1: Santa Cruz, 1:500; FAS: Cell Signaling Technology, 1:1000; FABP4: Cell Signaling Technology, 1:1000.
+ Open protocol
+ Expand
4

Mercuric Chloride Induced ER Stress

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mercuric chloride (HgCl2, purity > 99.5%; Sigma-Aldrich, St. Louis, MO) was dissolved in 0.1 mol sterile phosphate buffered saline (PBS) and added to mediums to provide Hg concentrations of 0 (Control), 5, 10, and 15 μmol/L. 4-Phenyl butyric acid (4-PBA, ER stress inhibitor) was obtained from Sigma Chemical Co. (St. Louis, MO).
Antibodies of PERK, p-PERK, CHOP, ATF4, GRP78, Pro-caspase-3, Cleaved caspase-3, Pro-caspase-9, Cleaved caspase-9, Bcl-2, Bax, and glyceraldehyde-3-phosphate dehydrogenase were from Abcam (Cambridge, England). The CEK cells were purchased from the Cell Biology Institution (Otwo, Shenzhen, China). They were cultured in high-glucose Dulbecco's Modified Eagle Medium (DMEM, Gibco, Pittsburgh, PA) containing 15% fetal bovine serum (Hyclone, Logan, UT) and incubated in a humidified 5% CO2 and 95% air incubator (Thermo Fisher Scientific, Grand Island, Maldives) at 37°C. Four independent experiments were performed in a parallel manner (n = 4). Each experiment had 4 concentrations, and each concentration had 4 parallel wells.
+ Open protocol
+ Expand
5

Hippocampal Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The hippocampus was homogenized in a lysis buffer containing a protease inhibitor cocktail (10 μL/ml, GE Healthcare Biosciences, PA, United States). The complex was centrifuged at 12,000 rpm/min at 4°C, and supernatants were removed to determine protein concentrations, calculated according to the standard curve. Proteins were separated on 10 or 12% SDS-polyacrylamide gels at 80 V for 2 h. After separation at 300 mA for 1.5 h, the protein bands were transferred to PVDF membranes. The membranes were blocked with 5% skimmed milk for 1.5 h. After washing three times with Tris-buffered saline with 0.05% Tween 20, the membranes were incubated with the primary antibodies overnight: JNK1/2, p-JNK1/2, GAPDH, superoxide dismutase 2 (SOD2), IL-6 (Proteintech, Chicago, IL, United States), Bax, Bcl-2, C-caspase3, postsynaptic dense protein 95 (PSD95), Nrf2, p-CREB133, BDNF, IL-1β, synapsin-1 synaptophysin, GRP78, ATF, protein kinase R-like endoplasmic reticulum kinase (PERK), p-PERK, p-IRE1α, CREB, p-CREB129, PKA, and IL-10 (Abcam, Cambridge, United Kingdom). The following day, membranes were incubated in corresponding secondary antibodies for 1 h at room temperature. Signals were visualized using the ChemiDocXRS + Imaging System (Bio-Rad). Blot bands were quantified using ImageJ software densitometry and expressed as relative density to GAPDH.
+ Open protocol
+ Expand
6

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The primary antibodies sarco/endoplasmic reticulum calcium ATPase (SERCA, 1:200, Santa Cruz Biotechnology, Santa Cruz, CA, USA, #271669), C/-EBP homologous protein (CHOP, 1:100, Santa Cruz Biotechnology, #7351), Bcl-2 (1:500, Cell Signaling Technology, Danvers, MA, USA, # 4223S), p-PERK (1:500, Abcam, Cambridge, UK, #156919), cytochrome c (1:100, Abcam, #90529), and β-actin (1:2000, Santa Cruz Biotechnology, #47778) were purchased and maintained overnight at 4 °C. Same quantities of protein were divided on 8–10% SDS (sodium dodecyl sulfate-polyacrylamide) gels and electro-transferred onto polyvinylidene fluoride membranes (Millipore, Bedford, MA, USA). Process of blocking was performed with 10% non–fat milk in TBS–T for 1 h at RT (room temperature). The membranes were then washed 3 times with TBS-T and probed with the corresponding secondary antibodies conjugated to HRP (horse radish peroxidase, Santa Cruz, CA, USA) at RT for 1 h. After washing, the blots were developed with ECL reagents (Pierce) and exposed using Kodak X–OMAT AR Film (Eastman Kodak, Rochester, NY, USA) for 1–5 min.
+ Open protocol
+ Expand
7

Extraction and Purification of TMF from M. exotica

Check if the same lab product or an alternative is used in the 5 most similar protocols
TMF has been isolated from the leaves of M. exotica and purified by repeated column chromatography and recrystallization in acetoacetate. The purity was found to be more than 98%. Fetal bovine serum (FBS), Dulbecco's modified Eagle's minimum essential medium (DMEM) (low glucose), penicillin, and streptomycin were purchased from Gibco (Life Technologies, NY, USA). GRP78, PERK, p-PERK, eIF2α, p-eIF2α, ATF6, IRE1α, XBP1s, CHOP, JNK, GSK-3β, Bax, Bak, and GAPDH monoclonal antibodies and the peroxidase-conjugated secondary antibody were obtained from Abcam (Cambridge, UK).
+ Open protocol
+ Expand
8

Western Blot Analysis of Cellular Stress

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the Western blot analysis, protein extraction was performed using RIPA protein lysis buffer (Beyotime Institute of Biotechnology, Haimen, China) containing a protease inhibitor cocktail and PMSF. The extracted protein was subjected to SDS-PAGE and transferred to a polyvinylidene fluoride (PVDF) membrane. The membrane was then blocked with 5% skim milk for 1 hour at room temperature. Subsequently, the primary antibody was used for incubation overnight. Prior to detection, membranes were washed with PBST and incubated with secondary antibodies in blocking buffer for 2 hours. The antibodies used for western blots were as follows: PCK2 ( Abclonal, A8446), IREa (CST, 3294S), P-IREa (Novus, NB100-2323), PERK (CST, 3192S), P-PERK (Abcam, ab192591), ATF6 (CST, 65880S), and GAPDH ( Proteintech, 60004-1-Ig).
+ Open protocol
+ Expand
9

Immunoblotting of ER Stress Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary antibodies for SERCA (1:200, #271669; Santa Cruz Biotechnology, CA, USA), C/-EBP homologous protein (CHOP, 1:100, Santa Cruz Biotechnology, #7351), Bcl-2 (1:500, # 4223S; Cell Signaling Technology, Danvers, MA, USA), p-PERK (1:500, #156919; Abcam, Cambridge, U.K.), caspase-3 (1:200, #56053; Santa Cruz Biotechnology), and β-actin (1:2000, #47778; Santa Cruz Biotechnology) were purchased and maintained overnight at 4 °C. The detailed protocol can be found in our previous study [27 (link)].
+ Open protocol
+ Expand
10

Protein Expression Profiling in Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
The procedures for protein extraction, protein concentration determination, conventional SDS-PAGE, protein band visualization, and protein band intensity measurement were performed according to our reported methods [20 ,21 (link)]. The used antibodies which were recognized included Bcl-2 (1:1000), Mcl-1 (1:1000), Noxa (1:1000), Bax (1:1000), PERK (1:1000), eIF2α (1:1000), LC3 (1:1000), p62 (1:1000) (Santa Cruz Biotechnology, Santa Cruz, CA, USA), P-PERK (1:500, Threonine-982), P-YAP1 (1:500, Serine-127) (Abcam, Cambridge, UK), P-eIF2α (1:500, Serine-51), YAP1 (1:1000) (Cell Signaling, Danvers, MA, USA), and Glyceraldehyde-3-phosphate Dehydrogenase (GAPDH, 1:3000) (R&D Systems, Minneapolis, MN, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!