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18 protocols using gentamicin

1

Culturing Ovarian Cancer and Endothelial Cells

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Two human ovarian cancer cell lines were used, A2780 and SKOV-3. A2780 was purchased from European Collection of Authenticated Cell Cultures (ECACC®, 93112519) and were cultured in RPMI-1640 medium with 2 mM l-glutamine, 10% (v/v) fetal bovine serum (FBS, Biological Industries) and 0.1% (v/v) gentamicin (50 mg/ml gentamicin sulfate, Biological Industries), in a humidified atmosphere containing 5% CO 2 , at 37 °C. SKOV-3 were purchased from American Type Culture Collection (ATCC® HTB-77™) and were cultured in Dulbecco's modified Eagle's medium (DMEM, Gibco) supplemented with 10% (v/v) fetal bovine serum (Biological Industries), and 0.1% (v/v) gentamicin (50 mg/ml gentamicin sulfate, Biological Industries), in a humidified atmosphere containing 5% CO 2 , at 37 °C. For the adhesion assay, dermal endothelium cells were used. HMEC-1, human microvascular endothelial cells-purchased from American Type Culture Collection (ATCC®, CRL-3243™) were cultured in MCDB131 (Gibco) supplemented with 10 ng/ml Epidermal Growth Factor (EGF, Thermo Fischer Scientific), 1 µg/ml hydrocortisone (Sigma-Aldrich), 10 mM glutamine (Sigma-Aldrich), 10% (v/v) fetal bovine serum (Biological Industries), and 0.1% (v/v) gentamicin (50 mg/ ml gentamicin sulfate, Biological Industries), in a humidified atmosphere containing 5% CO 2 , at 37 °C.
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2

Culturing Breast Cancer Cell Lines

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Human breast adenocarcinoma MCF-7 cell line (ATCC® HTB22™) and human breast cancer MDA-MB-231 cell line (ATCC® HTB-26™) were used. For MCF-7 cells Eagle’s MEM (11-040-1, Biological Industries) supplemented with European Grade 10% FBS (04-007-1A, Biological Industries) and 20 µg/ml gentamicin (03-035-1B, Biological Industries), as for MDA-MB-231 cells high glucose D-MEM (11-055-1, Biological Industries) supplemented with the same 10% FBS and 20 µg/ml gentamicin were used. Both cell lines were incubated temperature at 37°C in humidified, concentrated CO2 (5%) atmosphere. 0.05%Trypsin/0.02%EDTA in DPBS solution (03-054-1A, Biological Industries) as detaching agent was used.
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3

Aeromonas caviae Immune Response Analysis

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Aeromonas caviae (ATCC 15,468) was kept in our lab. The V X765 (specific caspase-1 inhibitor), CA074-Me (specific cathepsin B inhibitor) and BAY11–7082 (specific NF-κB inhibitor) were all obtained from Selleck (Shanghai). The Glyburide (specific K+ efflux inhibitor) and MCC950 (effective selective inhibitor of NLRP3) were aquired from MedChemExpress (Monmouth Junction). The gentamicin was obtained from Biological Industries (Israel). Antibodies of NLRP3 and caspase-1 were from Adipogen (San Diego). IL-1β was from R&D (Minneapolis). ASC was from Proteintech (Wuhan). The uncoated commercial kits for measuring mouse TNF-α, IL-6 and IL-1β were from Invitrogen (California).
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4

Flow Cytometry and Gene Expression Analysis

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Gentamicin and trypsin solutions were obtained from Biological Industries (Kibbutz Beit Haemek, Israel), Eagle's minimum essential medium (EMEM) from Lonza (Verviers, Belgium), and fetal bovine serum (FBS) from Biochrom (Berlin, Germany). All flow cytometry kits were purchased from Becton Dickinson (San Diego, CA, USA). All kits used for gene expression studies were purchased from Roche Diagnostics (Mannheim, Germany). The other principal chemicals used were obtained from Sigma (St. Louis, MO, USA).
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5

Primary Hippocampal Culture from Neonatal Mice

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Primary hippocampal cultures from P0-P2 pups of either sex were performed essentially as described previously101 (link),102 . Briefly, postnatal day 0–2 pups were decapitated, the brains quickly removed, hippocampi were dissected, sliced manually, and kept on ice in Hank’s Balanced Salt Solution (HBSS, Biological Industries) supplemented with 20 mM HEPES at pH 7.4. Hippocampus pieces were incubated for 20 min at room temperature (RT) in digestion solution consisting of 5 ml HBSS, CaCl2 1.5 mM, EDTA 0.5 mM and 100 units of papain (Worthington) activated with cysteine (Sigma-Aldrich). The brain fragments were then triturated gently two times. Cells were seeded at a density of 80,000–100,000 cells per well on 12 mm #1 glass coverslips coated with poly-D-Lysine (Sigma-Aldrich). Initially, cells were plated in plating medium consisting of Neurobasal-A medium supplemented with 2% B27, 2 mM Glutamax I (Thermo-Fisher Scientific), 5% defined FBS (Biological Industries) and 1 μg/ml gentamicin (Biological Industries). After 24 h, the plating medium was replaced with serum-free culture medium that consisted of Neurobasal-A, 2 mM Glutamax I and 2% B27. Cultures were maintained at 37 °C in a 5% CO2 humidified incubator for 12–15 days prior to staining or imaging.
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6

Cytotoxicity Evaluation of EDTA-Vanadium Conjugates

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The glioma cell line CNS-1 (obtained from Mariano S. Viapiano [23 (link)]) was grown in 96 well plates in DMEM containing 10% fetal calf serum; 2 mM L-glutamine, penicillin (100 units/mL), and streptomycin (0.1 mg/mL) under humidified atmosphere containing 5% CO2. Cells were seeded at 1000 cells/well. Twenty-four hours later, the EDTA and vanadium containing conjugates were added to each plate to give concentrations as indicated in the text. Control experiments using non-cancer cells were conducted with primary bovine brain pericytes and CD34+ human endothelial cells (both obtained and characterized at the Artois University, France [24 (link),25 (link),26 (link)]) treated with the HSA-EDTA-VO++ conjugate. These cells were seeded at 15,000 cells/well in ECM medium (Sciencell, Carlsbad, CA, USA), which was composed as follows: 5% fetal calf serum (Gibco, Gaithersburg, MD, USA), ECGS supplements, and 50 mg/mL gentamicin (Biological industries, Beit-Haemek, Israel). Cells were treated the day after. Cell viability was measured after 72 h using a standard MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) assay as described before [27 (link)]. Experiments were repeated at least 3 times in quadruplicate. IC50 values were calculated from the dose response curves using a median-effect plot.
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7

Cytometry Analysis of Cell Lines

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Gentamicin and trypsin/EDTA solutions were obtained from Biological Industries (Kibbutz Beit Haemek, Israel), Eagle's minimum essential medium (EMEM) from Lonza (Verviers, Belgium), and fetal bovine serum (FBS) from Biochrom (Berlin, Germany). All flow cytometry kits were purchased from Becton Dickinson (San Diego, CA, USA). The other principal chemicals used were obtained from Sigma (St. Louis, MO, USA).
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8

Transfection of U937 cells with HLA constructs

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The human monocytic cell line U937 was purchased from American Type Culture Collection (ATCC, Rockville, MD, USA). Full-length 6 kb HLA-B*2705 genomic DNA (B27g) or 5.1 kb HLA-A2 genomic DNA in pUC9 vectors were transfected by electroporation following published protocols [23 (link),24 (link)]. Briefly, approximately 5×106 cells were cultured in RPMI 1640 with 10% fetal calf serum (FCS), 3% L-glutamine, and 50 μg/mL of gentamicin (Biological Industries, Beit HaEmek, Israel) at 37°C with 5% CO2. Co-transfection of the HLA constructs and pSV2neo vectors were performed using a single pulse from a Gene Pulser (0.25 kV, 960 μF, Bio-Rad, Hercules, CA, USA). U937 cells in the mock group were transfected with pSV2neo plasmids only.
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9

Mammary Cell Propagation Assay

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For propagation rate, cells from each treatment were seeded in 96-well cell-culture plates (Corning, Corning, NY) at a density of 10,000 cells/well and cultured in mammary medium composed of DMEM-F12 medium containing 5% FBS, hydrocortisone (0.5 mg/ml, Sigma), insulin (5 mg/ml, Sigma), gentamicin (50 mg/ml, Biological Industries), streptomycin and penicillin (100 mg/ml and 100 U/ml, respectively), hEGF (10 ng/ml, Merck, Darmstadt, Germany), hFGF2 (10 ng/ml, Merck), heparin (4 mg/ml, Merck), cholera toxin (10 ng/ml, Sigma) and B27 (4 ml stock/ml, Invitrogen, Carlsbad, CA) (10) for the indicated period.
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10

Metastatic Rat Mammary Adenocarcinoma Protocol

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MADB106 is a selected variant cell line obtained from a pulmonary metastasis of a chemically induced mammary adenocarcinoma (MADB100) in the F344 rat [32 (link)]. MADB106 tumor cells metastasize only to the lungs, a process that is dependent upon NK cells [32 (link)]. The lung tumor retention (LTR) of MADB106 cells is highly indicative of the number of metastases that would have developed weeks later [16 (link), 32 (link)-34 (link)]. Additionally, because the metastatic process of MADB106 is sensitive to NK activity predominantly in the first 24 hours following inoculation [32 (link), 33 ], LTR is more reflective of in vivo NK activity levels than the number of actual metastases [16 (link)]. The MADB106 cell line was maintained in monolayer cultures in complete media (CM) (RPMI-1640 media supplemented with 10% heat-inactivated fetal calf serum (FCS), 50μg/mL of gentamicin, 2mM of L-glutamine, 0.1mM of non-essential amino-acids, and 1mM of sodium pyruvate, Biological Industries, Kibbutz Biet Haemek, Israel) in 100% humidity, 5% CO2 at 37°C. Cells were removed from the culture flask with trypsin solution (0.25% in PBS), and were washed with CM. This cell line was used for both in vivo assessment of lung tumor retention and ex-vivo examination of NK cytotoxicity.
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