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15 protocols using tdt fragel dna fragmentation detection kit

1

TUNEL Apoptosis Detection in Brain Regions

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Paraffin-embedded sections were cut (5 μm), deparaffinized in Roti-Histol (Carl Roth, Karlsruhe, Germany) twice for 10 min each, rehydrated in descending ethanol series, and rinsed in phosphate buffered saline for 3 min each at room temperature. After deparaffinization of sections an in situ detection of cells with DNA-strand breaks was performed by the TUNEL labeling method using a TdT-FragEL DNA fragmentation detection kit (Millipore, Darmstadt, Germany) according to the manufacturer's instructions. Negative controls were performed by substituting Tris-buffered saline for the TdT enzyme.
The TUNEL positive cells were analyzed in frontal cortex (FC), retrosplenial cortex (RSC), hypothalamus (HTH), thalamus (TH), and the hippocampus. Sections were viewed by light microscopy while blinded using a LEICA DM 2000 microscope equipped with a 200x magnification. TUNEL positive cells were counted in the anatomical regions of the brain in up to twelve different sections per animal and region.
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2

Apoptotic Cell Visualization via TUNEL Assay

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Apoptotic cells were visualized with the terminal deoxynucleotidyl transferase (TdT)-FragEL DNA Fragmentation Detection Kit (Millipore, Etobicoke, ON, Canada) according to the manufacturer’s instructions.
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3

Apoptosis Detection in Renal Tissues

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Apoptosis in renal tissues was identified by a Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL assay) with tissue paraffin blocks using TdT-FragEL DNA fragmentation detection kit (Millipore, Billerica, MA, USA) according to the manufacturer's instruction. Tissue sections were treated with proteinase K for 20 min. After TBS washing, the sections were incubated with DNase I for 20 min. Sections were then reacted with 3% H2O2 for 5 min, washed with TBS, incubated with TdT equilibration buffer for 20 min, followed by the incubation with TdT labeling reaction mixture for 1.5 h at 37°C in a humidified chamber. After TBS washing, the reaction was terminated by stop buffer solution for 5 min and washed and then blocked with blocking buffer for 10 min, followed by immersing the slides in conjugate solution for 30 min in a humidified chamber. After TBS washing, the sections were incubated with DAB solution for 15 min and rinsed with dH2O, followed by the examination under the light microscope. The samples were performed blindly to the animal treatment groups.
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4

Quantifying Apoptosis in Virus-Infected Brains

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Brains from control and MV-infected mice (7 dpi) were collected following the procedure for the immunofluorescence assay. Sagittal brain sections were fixed in 3.7 % formaldehyde and subjected to terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL; (TdT-FragEL DNA fragmentation detection kit; Millipore) using diaminobenzidine as a substrate. For counting of TUNEL-positive cells, four non-overlapping fields (×20) were chosen by a blinded examiner moving dorsally to ventrally across the slice. TUNEL-positive cells were counted on an Olympus BX41 Laboratory Microscope (Olympus Corporation). Three sagittal slices were counted from each brain, with three mice assayed per condition. The average number of TUNEL-positive cells per ×20 field ± standard error was determined.
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5

TUNEL Assay for Apoptosis Quantification

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Apoptotic cell death in tumor xenograft tissue sections was determined by TUNEL assay using the TdT-FragEL DNA Fragmentation Detection Kit (EMD Millipore, Burlington, MA) as described previously [24 (link)]. Briefly, sections were digested with proteinase K, and endogenous peroxidase activity was blocked with 3% hydrogen peroxide in 10 mM Tris (pH 8.0). The sections were then placed in equilibration buffer and incubated with TdT enzyme in a humid chamber at 37° C for 1.5 h. The apoptotic nuclei were stained by 3,3′-diaminobenzidine and observed by microscopy. We manually counted the number of positively stained nuclei and the percentage of positive cells versus the total number of cells was calculated.
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6

Immunohistochemical Analysis of Kidney Damage

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A section (2 µm thick for serial sections and 3 µm thick for other sections) from a paraffin-embedded right kidney after antigen retrieval was reacted with anti-8-hydroxy-2′-deoxyguanosine (8-OHdG) antibody (#MOG-020P, JaICA, Shizuoka, Japan), anti-NOX2 antibody (#sc-130543, Santa Cruz Biotechnology) or anti-ionized calcium-binding adapter molecule 1 (IBA1) antibody (#PA527436, Thermo Fisher Scientific), followed by incubation with EnVision™ + Dual Link System-HRP (#K4063, DAKO Japan, Tokyo, Japan). Visualization of the antigen was performed with 3, 3′-diaminobenzidine tetrahydrochloride. Sections were counterstained with hematoxylin.
For terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay, a TdT-FragEL™ DNA Fragmentation Detection Kit (#QIA33, Merck, Darmstadt, Germany) was employed.
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7

TUNEL Analysis of Tumor Sections

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5μm tumor sections were deparaffinized and rehydrated. TUNEL analysis was performed using the TdT-FragEL DNA Fragmentation Detection Kit (EMD Millipore, Billerica, MA) following the manufacturer's directions. At least 1000 cells and at least 3 sections per animal were analyzed.
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8

Clivorine Protects Liver against Injury

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Clivorine was isolated from L. hodgsonii Hook and identified by IR, NMR, and MS with 99.5% purity [4] (link). Quercetin was purchased from Sigma Chemical Co. (St. Louis, MO). Terminal dUTP nick end-labeling (TUNEL) staining system (TdT-FragEL DNA Fragmentation Detection Kit) was purchased from Merck Calbiochem (Darmstadt, Germany). The kits for determining serum alanine/aspartate transaminase (ALT/AST) activity, and total bilirubin (TB) level were obtained from the Shanghai Rongsheng Biotech Corporation (Shanghai, China). Anti-caspase-3 antibody was purchased from Cell Signaling Technology (Danver, MA). Peroxidase-conjugated goat anti-rabbit immunoglobulin G (IgG) (H+L) was purchased from Jackson ImmunoResearch (West Grove, PA). BCA Protein Assay Kit was purchased from Thermo Scientific (Rockford, IL). Anti-4 Hydroxynonenal (4-NHE) antibody was purchased from Abcam (Cambridge, UK). The DAKO EnVision detection system was purchased from DAKO Corporation (Carpinteria, CA). Trizol reagent was purchased from Life Technology (Carlsbad, CA). PrimeScript® RT Master Mix and SYBR Premix Ex Taq were purchased from Takara (Shiga, Japan). RT2 Profiler PCR array was purchased from Qiagen (Hilden, German). All other reagents were purchased from Sigma (St. Louis, MO), unless otherwise indicated.
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9

TUNEL Assay for Apoptosis Detection

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Paraffin-embedded tissues were cut into sections and TUNEL assays were performed using a TdT-FragEL™ DNA Fragmentation Detection Kit (QIA33, Merck) according to the manufacturer’s instructions. Sections were examined and photographed using a light microscope.
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10

Quantifying Apoptosis via TUNEL Assay

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TUNEL assay was performed to detect the apoptotic cells after 3 days in culture using the TdT-FragEL DNA Fragmentation Detection Kit (QIA33, Merck, Darmstadt, Germany) according to the manufacturer’s instructions. Apoptosis of tissue samples was evaluated using another TUNEL apoptosis detection kit (DAB type, Wanlei Biotechnology). TUNEL-positive cells were counted, and the apoptotic rate was calculated as follows: positive cells / (positive cells + negative cells) × 100%.
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