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8 protocols using urolithin a

1

Investigating Urolithin A and S-equol Regulation

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Urolithin A and S-equol (purity ≥98%) were obtained from Santa Cruz (Germany), siRNA targeting human TIGAR (ON-Targetplus; LQ-020597-01), and scrambled control siRNA were purchased from Dharmacon (via THP, Austria), Oligofectamine came from Invitrogen (via Life Tech, Austria) and all other chemicals, including oxaliplatin and enterolacton, were obtained from Sigma–Aldrich (Austria). The primary antibody against p21 (#ab109520) was obtained from Abcam (UK), the anti-p53 (#9282), and anti-TIGAR (#14751), anti-tubulin (#2144) and secondary antibodies were from Cell Signaling Technology (Germany) and the anti-actin (Clone C4; #08691001) antibody was from MP Biomedicals (Germany).
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2

Urolithin A Induced Cytotoxicity

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Urolithin A was obtained from Santa Cruz Biotechnology (Santa Cruz, CA, United States) and was diluted in dimethylsulfoxide (DMSO) and stored at -20°C. Recombinant rat tumor necrosis factor (TNF)α was purchased from R&D Systems (Minneapolis, MN, United States). H2O2 and collagenase type II were purchased from Sigma–Aldrich (St. Louis, MO, United States).
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3

Geraniin and Urolithin A Extraction

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Geraniin (purity ≥ 95%) was isolated and purified from leaves of Phyllanthus muellerianus [2 (link)]. Urolithin A (purity ≥ 98%) was obtained from Santa Cruz (Germany) and dihydrodichlorofluorescein-diacetate (H2DCF-DA) from Invitrogen (Austria). All other chemicals or enzymes were obtained from Sigma-Aldrich (Austria). All primary and secondary antibodies were obtained from New England Biolabs (Germany), except the anti-iNOS and the anti-p65 antibodies from Santa Cruz (Germany), the anti-caspase1 antibody from Abcam (UK), the anti HO-1 antibody from Enzo Life Sciences (Germany) and the FITC-coupled anti-rabbit antibody from Sigma-Aldrich (Austria).
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4

Comprehensive Chemical Supplies Inventory

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Cyanidin-3-rutinoside, cyanidin chloride, 3,3’-diethyloxacarbocyanin iodide, resazurin, sulforhodamine B, Flutamide, and carboxymethylcellulose were purchased from Sigma-Aldrich (St. Louis, MO). Ellagic acid was obtained from Indofine Chemical (Hillsborough, NJ). Protocatechuic acid waspurchased from LKT Labs (St. Paul, MN). Urolithin A was obtained from Santa Cruz (Dallas, TX). Crystalline testosterone, testosterone propionate, and 17β-estradiol were obtained from Steraloids (Newport, RI). Noble agar was purchased from Affymetrix (Cleveland, OH). DMSO, EtOH, formaldehyde, formic acid and trichloroacetic acid were obtained from Thermo Fisher Scientific (Waltham, MA). Ketamine was obtained from Henry Schein Animal Health (Dublin, OH). Xylazine was purchased from Lloyd Laboratories (Shenandoah, IA). N-methyl-N-nitrosourea was obtained from the NCI Carcinogen Repository (MRIGlobal, Kansas City, MO).
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5

Cytoskeletal Protein Assay Protocol

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Docetaxel and sulforhodamine B were purchased from Sigma-Aldrich (St. Louis, MO). Cabazitaxel (Sanofi, Bridgewater, NJ) was a generous gift from Dr. Robert Nagourny (Rational Therapeutics, Long Beach, CA). Ellagic acid was obtained from Indofine Chemical (Hillsborough, NJ). Urolithin A was obtained from Santa Cruz (Dallas, TX). Protocatechuic acid was purchased from LKT Labs (St. Paul, MN). Purified tubulin protein was purchased from Cytoskeleton (Denver, CO). Phenol-red free matrigel was obtained from Corning (Bedford, MA). DMSO, ethanol, and trichloroacetic acid were obtained from Thermo Fisher Scientific (Waltham, MA). Antibodies against β-actin (catalog #3700), β-tubulin (#2128), anti-mouse Alexa Fluor 488 (#4408), and anti-rabbit Alexa Fluor 555 (#4413) were obtained from Cell Signaling Technologies (Danvers, MA). GAPDH (#365062) antibody was obtained from Santa Cruz Biotechnology (Dallas, TX). IRDye 800 anti-rabbit (#926-32211) and IRDye 680 anti-mouse (#926-68070) antibodies were obtained from Li-Cor Biotechnology (Lincoln, NE).
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6

Investigating Urolithin A and S-equol Regulation

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Urolithin A and S-equol (purity ≥98%) were obtained from Santa Cruz (Germany), siRNA targeting human TIGAR (ON-Targetplus; LQ-020597-01), and scrambled control siRNA were purchased from Dharmacon (via THP, Austria), Oligofectamine came from Invitrogen (via Life Tech, Austria) and all other chemicals, including oxaliplatin and enterolacton, were obtained from Sigma–Aldrich (Austria). The primary antibody against p21 (#ab109520) was obtained from Abcam (UK), the anti-p53 (#9282), and anti-TIGAR (#14751), anti-tubulin (#2144) and secondary antibodies were from Cell Signaling Technology (Germany) and the anti-actin (Clone C4; #08691001) antibody was from MP Biomedicals (Germany).
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7

Cardiac Fibroblast Regulation by TGF-β1 and Urolithin A

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TGF-β1 (10 ng/mL, R&D, USA) and Urolithin A (Santa Cruz Biotechnology, USA) with indicated concentrations were used to treat cardiac fibroblasts. Negative control siRNA (si-NC) and Nrf2 specific siRNA (si-Nrf2) were designed and purchased from GenePharma (Shanghai, China). Cell transfection was performed by Lipofectamine 3000 (Invitrogen, USA) for 48 h.
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8

Cultivation and Differentiation of Neural Cell Lines

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The BV2 mouse microglia cell line (ICLC ATL03001; Interlab Cell Line Collection, Banca Biologica e Cell Factory, Italy) was cultured in RPMI1640 medium with 10% fetal bovine serum, 2 mM L-glutamine, 1 mM sodium pyruvate, 100 U/ml penicillin and 100 mg/ml streptomycin in a 5% CO 2 incubator. HEK293 (ECACC 85120602) cells were obtained from the European Collection of Cell Cultures (ECCAC) (Salisbury, UK) and were cultured in MEM-eagle's medium (Thermo Scientific). MEM medium was supplemented with 10% FBS, 2 mM Lglutamine, 1 mM sodium pyruvate, 2 mM L-glutamine, 100 U/ml penicillin, and 100 mg/ml streptomycin in a 5% CO2 incubator.
Immortalised neural progenitor cells (ReNcell VM cells) were acquired commercially from Millipore (Hertfordshire, UK) and maintained as earlier described 17 . Cells were differentiated by replacing the culture medium with ReNcell NSC maintenance medium without the growth factors EGF and FGF-2 for 14 days. Differentiation into neurons was confirmed by immunocytochemical staining for βIII-tubulin and MAP2 17 (Supplementary Figure S1-S3).
Urolithin A (Santa Cruz), EX527 (Sigma) and chloroquine (Arcos Organics) were prepared in dimethylsulfoxide (DMSO) for pharmacological experiments. The percentage of DMSO in cell culture was 0.2%. For all experiments, 5 x 10 4 cells/ml were seeded out in culture plates.
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